
genewise output
Score 426.71 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000019_2.0    1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQ 
                     MA+IAKSFYDLSA+SLDG+K+DFNTFRGRAVLIENVASLXGTTTRDFTQ 
                     MAYIAKSFYDLSAVSLDGDKIDFNTFRGRAVLIENVASLXGTTTRDFTQ 
gi|406021770|gb50000 agtagatttgcaggacgggaagtaatcgaggcagaggtctgaaacgtac 
                     tcatcactaatgctgtagaatatactgggctttaatcctggcccgatca 
                     gcctcgccctcttccgtgcgacccgcccgaggtgtgcgcataccgcccg 


SPP00000019_2.0   50 LNELQCRFPRRLVVLGFPCNQFGHQ                       E 
                     LNELQCRFPRRLVVLGFP NQFGHQ                       E 
                     LNELQCRFPRRLVVLGFPSNQFGHQ                       E 
gi|406021770|gb50147 cagcctctcaccggcgtctactgccGTGAGGA  Intron 1   CAGg 
                     taataggtcggttttgtccaatgaa<0-----[50222:53363]-0>a 
                     ctggacctcgcggttcctccatatg                       a 


SPP00000019_2.0   76 NCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 
                     NCQNEEILNSLKYVRPGGG+QPTFTLVQKCEVNGQNEHPVFAYLKDKLP 
                     NCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 
gi|406021770|gb53367 atcaggacaacatgccgggtccatacgcatggagcagccgtgttagacc 
                     agaaaattagtaatgcgggtacctcttaagatagaaaacttcataaatc 
                     ctgtggcgctcgtcctatccgcatctcagtggttgcgtgccccggcgcc 


SPP00000019_2.0  125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF 
                     YP+DDPFSLMTDPK +IWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF 
                     YPHDDPFSLMTDPKFLIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF 
gi|406021770|gb53514 tccggcttcaagcatcatacgcctgggtatgatcagcgggctcctacat 
                     acaaactcttcacatttggctggcatcgataatttgcagactggaggct 
                     ctttcatccgctcgcctgccgccatgcgctggctagaggggccccctcc 


SPP00000019_2.0  174 PTINIEPDIKRLLKVAI                                 
                     PTINIEPDIKRLLKVAI                                 
                     PTINIEPDIKRLLKVAI                                 
gi|406021770|gb53661 caaaagcgaacccagga                                 
                     cctatacatagttatct                                 
                     cccctgtccgcccatca                                 


//
>gi|406021770|gb|JH823477.1|:subseq(5200303,157973).pep
MAYIAKSFYDLSAVSLDGDKIDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR
LVVLGFPSNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLK
DKLPYPHDDPFSLMTDPKFLIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEP
DIKRLLKVAI
//
>gi|406021770|gb|JH823477.1|:subseq(5200303,157973).[50000:53711].sp
ATGGCCTACATTGCCAAGTCCTTCTACGATCTCAGTGCTGTCAGCCTGGATGGGGACAAG
ATAGACTTCAACACGTTCCGCGGCAGGGCAGTGCTGATTGAGAATGTGGCCTCGCTCTGA
GGTACAACCACCCGGGACTTCACCCAGCTCAATGAGCTGCAATGCCGCTTTCCCAGGCGC
CTGGTGGTTCTTGGCTTCCCTTCCAACCAATTTGGACATCAGGAAAACTGTCAGAATGAG
GAGATCCTGAACAGTCTCAAGTATGTCCGCCCTGGAGGTGGCTTCCAGCCCACATTTACC
CTTGTCCAAAAGTGTGAGGTGAATGGTCAGAACGAGCATCCGGTCTTCGCCTACTTGAAG
GACAAGCTCCCCTACCCTCATGATGACCCATTTTCCCTCATGACCGATCCCAAGTTCCTC
ATTTGGAGCCCCGTGCGCCGCTCAGATGTGGCCTGGAACTTTGAGAAGTTCCTTATAGGG
CCAGAGGGGGAGCCGTTCCGCCGCTACAGCCGTACCTTCCCCACCATCAACATTGAGCCT
GACATCAAGCGCCTCCTCAAAGTTGCCATA
//
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	match	50000	53711	426.71	+	.	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	cds	50000	50221	0.00	+	0	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	intron	50222	53363	0.00	+	.	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	cds	53364	53711	0.00	+	0	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
//

genewise output
Score 18.77 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000019_2.0  158 LIGPEGEPFRRYSRTFPT                                
                     LI PE EP+R  S   PT                                
                     LIVPENEPIRLESTQSPT                                
gi|406021770|g-66635 cagcgagcaatgaacaca                                
                     tttcaaactgtagcagcc                                
                     gagaatgccggactatat                                


//
>gi|406021770|gb|JH823477.1|:subseq(5200303,157973).pep
LIVPENEPIRLESTQSPT
//
>gi|406021770|gb|JH823477.1|:subseq(5200303,157973).[66635:66580].sp
CTGATAGTGCCAGAAAATGAGCCCATCAGGTTGGAAAGCACTCAAAGTCCAACT
//
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	match	66635	66582	18.77	-	.	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
gi|406021770|gb|JH823477.1|:subseq(5200303,157973)	GeneWise	cds	66635	66582	0.00	-	0	gi|406021770|gb|JH823477.1|:subseq(5200303,157973)-genewise-prediction-1
//
