
genewise output
Score 408.34 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000002_2.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQ  LWLK+LWVLL+V +HV VGKVLL LFP+RVK++ILA       
                     MGLPQLMLWLKKLWVLLKVTLHVAVGKVLLTLFPERVKQSILA------ 
gi|406021965|gb50000 agccctacttaactgctagaccggggagccactcgagacaacg       
                     tgtcatttgtaatgtttatctatctgatttcttcagtaagttc       
                     gggcgaggggggcggtgggcgtgcgcgaagagctgacggccgc       


SPP00000002_2.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                        NPHF++D W  T+FS  YF F+LKV WQRLED TE GGLAPNCPVV 
                     --QNPHFAYDMWSSTIFSIPYFRFILKVHWQRLEDKTEQGGLAPNCPVV 
gi|406021965|gb50129   cacctgtgatataataacttatacagctcccggaagcggcgcatcgg 
                       aacatcaatggccttgtcatgtttatagagtaaacaaggtccagctt 
                       gccctctcggcgcccccaccgtcggctggagacgtgagtgtacttgc 


SPP00000002_2.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                      LSGQRCNIW+FMQ                           RPLVLNFG 
                     HLSGQRCNIWDFMQ          G:G[ggc]        TRPLVLNFG 
gi|406021965|gb50270 cctgcataatgtacGGTCAGGA  Intron 1   TAGGCaactgcatg 
                     atcgaggatgatta <1-----[50313:64649]-1>  cgctttatg 
                     ctatagcctgccga                          cgagagtta 


SPP00000002_2.0  123 SCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCTXPSF+ KFDQFKRLIEDFSSIADFL+IYIEEAHA+            
                     SCTXPSFLSKFDQFKRLIEDFSSIADFLIIYIEEAHAT            
gi|406021965|gb64679 atatcttctatgctaacaggtataggtcaatagggcga            
                     ggcgccttcataatagttaatgctcattttataacacc            
                     cccatattcatcacgataacttcaactcctctaaataa            


SPP00000002_2.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAF+NN+ IRNH+NLQDRLQAA 
                               D:D[gat]        GWAFQNNVAIRNHRNLQDRLQAA 
gi|406021965|gb64793 GGTACAGA  Intron 2   CAGATgtgtcaaggaaaccaccgcccgg 
                      <1-----[64794:74966]-1>  ggctaaatctgaagataagtacc 
                                               cgttgctgccgtcgccgccggat 


SPP00000002_2.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                     HLLL R P CPVVVDTMQN SSQLYAALPERLY++QEGRILYK       
                     HLLLERRPTCPVVVDTMQNVSSQLYAALPERLYVLQEGRILYK       
gi|406021965|gb75038 ccccgaacatcggggaacagaacctggccgactgccggaacta       
                     atttaggccgctttactaatggatacctcagtattaaggttaa       
                     cgtggagagctgggccggcgccgccaagcggctgcgacgcttg       


SPP00000002_2.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GK GPWNY+PEEV AVLEKL+S     
                                            GKPGPWNYHPEEVHAVLEKLNS     
gi|406021965|gb75167 GTAGTGA  Intron 3   CAGgacgctatccgggcggcgacaa     
                     <0-----[75167:79978]-0>gacgcgaaacaatacttaatag     
                                            tgtctgcctagagtttgagcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|406021965|gb|JH823282.1|:subseq(19443326,300000).pep
MGLPQLMLWLKKLWVLLKVTLHVAVGKVLLTLFPERVKQSILAQNPHFAYDMWSSTIFSI
PYFRFILKVHWQRLEDKTEQGGLAPNCPVVHLSGQRCNIWDFMQGTRPLVLNFGSCTXPS
FLSKFDQFKRLIEDFSSIADFLIIYIEEAHATDGWAFQNNVAIRNHRNLQDRLQAAHLLL
ERRPTCPVVVDTMQNVSSQLYAALPERLYVLQEGRILYKGKPGPWNYHPEEVHAVLEKLN
S
//
>gi|406021965|gb|JH823282.1|:subseq(19443326,300000).[50000:80044].sp
ATGGGGCTGCCCCAGTTAATGCTGTGGTTGAAGAAGCTCTGGGTGCTTTTGAAGGTGACC
CTGCATGTGGCCGTGGGCAAGGTACTACTGACACTGTTCCCTGAGAGAGTCAAGCAGAGC
ATCCTGGCCCAGAACCCCCACTTTGCCTATGACATGTGGAGCTCGACCATCTTCAGCATC
CCATACTTCAGGTTTATCCTGAAGGTCCATTGGCAGCGACTGGAAGACAAGACTGAGCAA
GGGGGTCTGGCTCCAAACTGTCCTGTGGTCCACCTTTCAGGTCAAAGGTGCAACATTTGG
GACTTCATGCAAGGCACCAGGCCATTGGTACTGAATTTTGGAAGCTGCACCTGACCTTCA
TTTCTTTCCAAATTTGACCAATTCAAGAGACTTATAGAAGACTTTAGTTCCATAGCAGAC
TTTCTCATCATTTACATTGAAGAAGCACATGCAACAGATGGCTGGGCTTTTCAGAACAAT
GTGGCCATCAGGAATCACCGGAACCTCCAGGACCGCCTGCAGGCAGCTCACCTGCTTCTG
GAGAGAAGGCCAACGTGCCCTGTGGTGGTGGACACCATGCAGAACGTGAGCAGCCAGCTC
TACGCAGCACTGCCCGAGAGGCTCTATGTGCTCCAGGAAGGCAGGATCCTTTATAAGGGT
AAGCCTGGCCCTTGGAACTACCATCCAGAGGAAGTGCATGCTGTTCTGGAAAAGCTCAAC
AGT
//
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	match	50000	80044	415.33	+	.	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	cds	50000	50312	0.00	+	0	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	intron	50313	64649	0.00	+	.	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	cds	64650	64793	0.00	+	2	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	intron	64794	74966	0.00	+	.	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	cds	74967	75166	0.00	+	2	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	intron	75167	79978	0.00	+	.	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	cds	79979	80044	0.00	+	0	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
//

genewise output
Score 22.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000002_2.0    6 PGLWLKRLWVLLEVA                                   
                     PG+WL  +W LL++A                                   
                     PGVWLLWVWPLLKMA                                   
gi|406021965|gb-2707 cggtcctgtcccaag                                   
                     cgtgttgtgcttatc                                   
                     taggggggggaaggt                                   


//
>gi|406021965|gb|JH823282.1|:subseq(19443326,300000).pep
PGVWLLWVWPLLKMA
//
>gi|406021965|gb|JH823282.1|:subseq(19443326,300000).[2707:2661].sp
CCTGGAGTGTGGCTGCTGTGGGTGTGGCCGCTACTAAAGATGGCT
//
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	match	2707	2663	22.67	-	.	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(19443326,300000)	GeneWise	cds	2707	2663	0.00	-	0	gi|406021965|gb|JH823282.1|:subseq(19443326,300000)-genewise-prediction-1
//
