genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: schizosaccharomyces
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End local
Target Sequence HS307871
Strand: forward
Start/End (protein) local
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 258.22 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
schizosaccharom 1 MKNDLILRAAKGEEVERPPVWIM--ASWKIS
+KND +LRAA GEE + PVW M A +
LKNDTFLRAAWGEETDYTPVWCMRQAGRYLP
HS307871 1767 caagatccggtgggagtacgttaccggcttc
taaacttgccggaacaacctggtgacggatc
ggtcacgaacgagaacctctgcgcgactcaa
schizosaccharom 30 SWYVHDLNLIVCTNETIEYHKLR
W L+ + E+ + R
-:G[ggg] LWRASRLSPVFPL--YAEFRETR
HS307871 1860 GGTAAGAG Intron 1 GAGGGctagtacacgtcc tggtagac
<1-----[1861 : 1927]-1> tggccgtgcttct acatgacg
cggcaggctcctg tagtgacg
schizosaccharom 53 AKQSFFEMCQTPETACELTLQ PVTRF
A Q FF C++PE CELTLQ P+ RF
AAQDFFSTCRSPEACCELTLQ PLRRF
HS307871 1993 ggcgttaatctcggttgcaccGTGAGGG Intron 2 CAGcccct
ccaattgcggccacggatcta<0-----[2056 : 2131]-0>ctggt
tcgctccgtcttgcctagtgg agtcc
schizosaccharom 79 KGLLDAAIIFSDILVIPQ ALGMQVVM
LLDAAIIFSDILV+PQ ALGM+V M
--LLDAAIIFSDILVVPQ ALGMEVTM
HS307871 2147 ccgggaattgacggccGTACCCA Intron 3 CAGgcgaggaa
ttacctttcattttca<0-----[2195 : 2433]-0>ctgtatct
tgttcctccccttacg agcgggcg
schizosaccharom 105 LEQKGPHFPKPLVVPEDIDLLEKTPNISAKLGYVMDAISLTREKLDGQV
+ KGP FP+PL +D++ L ++++LGYV+ AI+LTR++L G+V
VPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRV
HS307871 2458 gcgagcatcgctaggcgcgcccgcggggtgcgtgtcgaacaccccggcg
tcgagcgtcactgaaaatagtgacattccatgattactctcgagtcggt
atcaacccagaaaaggcaacagtaagactgactgcaccctcaaagtatg
schizosaccharom 154 PLMGFSGAP WTIMAYMIEGGGSKTFA
PL+GF+GAP WT+M YM+EGGGS T+A
PLIGFAGAP WTLMTYMVEGGGSSTMA
HS307871 2605 ccagtgggcGTAATGT Intron 4 TAGtacaatagggggtaaag
cttgtcgcc<0-----[2632 : 2748]-0>gcttcattagggcgctc
ggtctttca gcggacgtgttcaccgt
schizosaccharom 180 KAKSWLFRYPEASHKLLKIITDATVSYLIQQVYAGAQ
+AK WL++ P+ASH+LL+I+TDA V YL+ QV AGAQ
QAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQ
HS307871 2800 cgactctcaccgacccccacaggcgctcggcgggggc
acaggtaagcacgaattgttcacttcattgattcgca
gcgcgctgatgttcggtccctttgcatgaaaggttcg
schizosaccharom 217 LLQIFDSWAGELSPEDFTEYAYPYLV
LQ+F+S AG L P+ F ++A PY+
ALQLFESHAGHLGPQLFNKFALPYIR
HS307871 2911 GTGAGTC Intron 5 TAGgtcctgtcggccgccctaatgcctac
<0-----[2911 : 3278]-0>ctattacacgatgcattaatctcatg
agggtgctagttcagcccgtagtcct
schizosaccharom 243 RICQEVKQHLKKKKRDEVPM IVFAKG
+ ++VK L++ VPM I+FAK
DVAKQVKARLREAGLAPVPM IIFAKD
HS307871 3357 gggacgagatcgggcgcgcaGTGAGGA Intron 6 TAGaatgag
atcaatacgtgacgtcctct<0-----[3417 : 3575]-0>tttcaa
tgcgaggcggggacgaagcg ccttgt
schizosaccharom 269 AWYAIDQLCDSGYDVIGLDWTVSPKEA
+A+++L +GY+V+GLDWTV+PK+A
GHFALEELAQAGYEVVGLDWTVAPKKA V:R[cgg]
HS307871 3594 gctgcggcgcggtggggcgtaggcaagCGGTAAGCC Intron 7
gatctaatcacgaattgtagctccaac <2-----[3677 : 3779]
gttcggggcatctggtgtcgagcagac
schizosaccharom 296 RIRGNRRVTFQGNLDPNILYGTR
G + VT+QGNLDP LY +
ECVG-KTVTLQGNLDPCALYASE
HS307871 3777 CAGGgtgg aagatcgacgctgttgtgGTAACAG Intron 8
-2> agtg actctagatacgctacca<0-----[3847 : 4178]
gtgg gggaggccgcctcgtatg
schizosaccharom 320 EIIEARTKEMIQDFGGGKQGYIINLGHGITPGVNPDDVRFFLEKCH
E I K+M+ DFG + YI NLGHG+ P ++P+ V F++ H
EEIGQLVKQMLDDFGPHR--YIANLGHGLYPDMDPEHVGAFVDAVH
HS307871 4176 CAGggagctgacacggtgccc tagatgcgctcgagcgcgggtggggc
-0>aatgattaattaatgcag atcatgagtacatacaatgcttacta
ggcggggggggtctaatc ctccgctgtttcgcaatgcctgttgt
schizosaccharom 366 QY
++
KH
HS307871 4311 ac
aa
ac
//
Gene 1
Gene 1767 4316
Exon 1767 1860 phase 0
Exon 1928 2055 phase 1
Exon 2132 2194 phase 0
Exon 2434 2631 phase 0
Exon 2749 2910 phase 0
Exon 3279 3416 phase 0
Exon 3576 3676 phase 0
Exon 3780 3846 phase 2
Exon 4179 4316 phase 0
//
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