
genewise output
Score 476.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00002883_2.0   18 KYSAVDTNPLSLYVMHPFWNSIVR                          
                      YSAVDTNPLSLYVMHPFWN IV                           
                     QYSAVDTNPLSLYVMHPFWNFIVN                          
BLSH010528819.150000 ctagggaacctctgaccttatagaGTGAGTA  Intron 1         
                     aagctacactctattactgattta<0-----[50072  :  55137]  
                     gctggcctcccgttgcacgctacc                          


SPP00002883_2.0   42    FFPTWLAPNLITFSGFLLLVFTFLLMAFFDPDFYAS           
                        F PTWLAPNLITFSGFLLLVF FL+MAFFDPDFYAS           
                        FVPTWLAPNLITFSGFLLLVFNFLMMAFFDPDFYAS           
BLSH010528819.155135 CAGtgcatcgcataatagttccgtatcaagttgcgttgt           
                     -0>ttccgtccattctggttttttattttcttacatacc           
                        ttcaggtctactcctcgggcctcggggctttcctat           


SPP00002883_2.0   78                               PGQEHVPNWVWIVAGLLNF 
                                                   PG +HVP+WVWIVAGLLNF 
                               A:A[gca]            PGHDHVPSWVWIVAGLLNF 
BLSH010528819.155246 GGTATGTT  Intron 2       CAGCAcgcgcgcatgtagggccat 
                      <1-----[55247  :  68977]-1>  cgaaatcggtgttcgttat 
                                                   attctcccgggactagacc 


SPP00002883_2.0   98 TAYTL                              GVDGKQARRTNSST 
                     TAYTL                              GVDGKQARRTNSST 
                     TAYTL          D:D[gat]            GVDGKQARRTNSST 
BLSH010528819.169037 agtatGGTGAGTC  Intron 3       CAGATggggacgcaaataa 
                     ccact <1-----[69053  :  71762]-1>  gtagaacggcacgc 
                     aacaa                              attcgggaaaccct 


SPP00002883_2.0  118 PLGELFDHGLDSWACIFFVVTVYSIFGRGETGVSAVVLYFLLWVVLFSF 
                     PLGELFDHGLDSWACI+FVVTVYSIFGRG+TGVS +VLY+LLWVVLFSF 
                     PLGELFDHGLDSWACIYFVVTVYSIFGRGDTGVSVLVLYLLLWVVLFSF 
BLSH010528819.171807 ccggctgcgcgatgtattggagttatgcggaggagcgctccctggcttt 
                     ctgattaagtaggcgtatttctacttgggacgtgttttatttgttttct 
                     ataagtccggccgcccctagttcaccgagtaactcgatcccgggggccc 


SPP00002883_2.0  167 ILSHWEKYNTGILFLPWGYDLSQV                          
                     ILSHWEKYNTGILFLPWGYDLSQV                          
                     ILSHWEKYNTGILFLPWGYDLSQV                          
BLSH010528819.171954 actctgataagactcctgtgcacgGTGAGTC  Intron 4         
                     ttcagaaaacgttttcggaatgat<0-----[72026  :  72106]  
                     cgatggacctacccgcgatcccag                          


SPP00002883_2.0  191    TISCVYLVTAVVGVETWYQPVVFNILYRDLFTTMIV           
                        TIS VYLVTA+VGVE WY+PVVFNILYRDLFTTMIV           
                        TISLVYLVTAMVGVEAWYKPVVFNILYRDLFTTMIV           
BLSH010528819.172104 CAGaatcgtcgagagggggttacggtaattcgctaaaag           
                     -0>ctcttattccttgtacgaactttattagattccttt           
                        ctaggcgataggagacgcgccatctgttccctcgat           


SPP00002883_2.0  227                               CAVCVTLPMSLYNVF     
                                                   CAV VTLPMSLYNVF     
                               G:G[ggt]            CAVTVTLPMSLYNVF     
BLSH010528819.172215 GGTAAGAT  Intron 5       CAGGTtggagaccaactagt     
                      <1-----[72216  :  87800]-1>  gctctctctgtaatt     
                                                   tagtctttgcgtttt     


SPP00002883_2.0  243                               GYRNNTLKHASLYEAMLPI 
                                                   GYRNNTLKH +LYE+MLPI 
                                K:K[aaa]           GYRNNTLKHTTLYESMLPI 
BLSH010528819.187848 AAGTAAGTT  Intron 6       TAGAgtcaaatacaattgtacca 
                       <2-----[87850  :  91341]-2> gagaactaacctaacttct 
                                                   ttccctggtatacgagcac 


SPP00002883_2.0  263 ISPVLLFILSTLWILASPSKILEHHPRLFYFMVGTTFANIT         
                     ISPVLLFILS +WI ASP+KIL+ +PRLFY+MVGTTFANIT         
                     ISPVLLFILSAIWIFASPTKILDAYPRLFYYMVGTTFANIT         
BLSH010528819.191400 atcgcctattgatatgtcaaacggtccctttaggaatgaaa         
                     tccttttttcctgttccccattacacgttaattgcctcatc         
                     cttggccagtacgctctctgcgtcctctcccgggcctcttt         


SPP00002883_2.0  304                            CQLIVCQMSNTRCRPLSWLLIP 
                                                C+LIVCQMSNTRC+PL+WLL+P 
                                                CKLIVCQMSNTRCQPLTWLLVP 
BLSH010528819.191523 GTAAGTC  Intron 7       CAGtacagtcaaaaatcccatccgc 
                     <0-----[91523  :  98544]-0>gatttgatgacggactcgtttc 
                                                tggcatggttaacacacggccc 


SPP00002883_2.0  326 LTGSVFTGGSVFTGGSVFMLLLFVSV                        
                     L   V    S F   +  +LL++++V                        
                     LALVVVAVVSGFANETEALLLVLLTV                        
BLSH010528819.198611 tgcggggggtgtgagaggcccgccag                        
                     tcttttcttcgtcaacacttttttct                        
                     gaagatcgctgcctatatcgatagaa                        


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>BLSH010528819.1:subseq(504328,604328).pep
QYSAVDTNPLSLYVMHPFWNFIVNFVPTWLAPNLITFSGFLLLVFNFLMMAFFDPDFYAS
APGHDHVPSWVWIVAGLLNFTAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWACIYFVV
TVYSIFGRGDTGVSVLVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDLSQVTISLVYL
VTAMVGVEAWYKPVVFNILYRDLFTTMIVGCAVTVTLPMSLYNVFKGYRNNTLKHTTLYE
SMLPIISPVLLFILSAIWIFASPTKILDAYPRLFYYMVGTTFANITCKLIVCQMSNTRCQ
PLTWLLVPLALVVVAVVSGFANETEALLLVLLTV
//
>BLSH010528819.1:subseq(504328,604328).[50000:98688].sp
CAGTACAGTGCGGTGGACACCAATCCCCTCTCCCTGTATGTTATGCACCCATTCTGGAAC
TTTATAGTCAACTTTGTTCCCACATGGCTGGCTCCCAATTTAATCACTTTCAGCGGTTTC
TTGCTGCTGGTCTTCAATTTCCTGATGATGGCGTTCTTTGATCCTGACTTCTATGCATCT
GCACCAGGTCATGACCATGTCCCCAGCTGGGTGTGGATAGTCGCTGGACTGCTAAACTTC
ACAGCATACACATTAGATGGAGTTGATGGCAAGCAGGCGCGAAGAACAAACTCCAGCACT
CCACTTGGAGAACTGTTTGACCACGGGCTGGACAGCTGGGCCTGCATCTACTTTGTAGTG
ACTGTTTACTCAATCTTCGGGCGAGGGGATACAGGAGTCAGTGTCCTGGTACTTTACCTC
CTCCTGTGGGTGGTGCTGTTCTCCTTCATCCTGTCACATTGGGAGAAATACAACACTGGA
ATCCTCTTCCTGCCCTGGGGATATGACCTCAGCCAAGTGACCATTTCACTGGTGTACCTG
GTAACTGCAATGGTGGGAGTGGAAGCCTGGTACAAGCCCGTCGTATTTAACATTTTGTAT
CGTGACCTCTTCACTACCATGATAGTTGGTTGTGCAGTGACTGTCACTCTTCCTATGAGC
CTGTATAATGTTTTTAAAGGTTATCGCAACAACACTTTGAAGCATACAACTTTATACGAG
TCAATGCTCCCAATCATCTCTCCTGTGCTGCTCTTCATATTGTCTGCAATCTGGATCTTT
GCCTCTCCCACTAAGATCCTGGATGCCTACCCTCGCCTTTTCTACTACATGGTGGGGACC
ACCTTTGCCAATATTACTTGTAAGCTGATCGTATGTCAGATGAGTAATACAAGATGCCAA
CCCCTAACCTGGCTGCTCGTCCCCTTGGCACTAGTGGTAGTTGCCGTGGTCTCTGGGTTC
GCCAATGAAACTGAAGCTCTCCTGCTAGTTCTACTGACAGTA
//
BLSH010528819.1:subseq(504328,604328)	GeneWise	match	50000	98688	486.15	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	50000	50071	0.00	+	0	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	50072	55137	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	55138	55246	0.00	+	0	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	55247	68977	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	68978	69052	0.00	+	2	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	69053	71762	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	71763	72025	0.00	+	2	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	72026	72106	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	72107	72215	0.00	+	0	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	72216	87800	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	87801	87849	0.00	+	2	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	87850	91341	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	91342	91522	0.00	+	1	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	intron	91523	98544	0.00	+	.	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
BLSH010528819.1:subseq(504328,604328)	GeneWise	cds	98545	98688	0.00	+	0	BLSH010528819.1:subseq(504328,604328)-genewise-prediction-1
//
