_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-19
 Query name: gi|1039374511|ref|XP_008431571.2| PREDICTED: 15 kDa selenoprotein [Poecilia reticulata]
 Query range: 17-153  (total 153)

 Target: /data/www-rg/seblastian_results/562916897/tempfiles/temptarget.fasta
 Chromosome: BLSH010355584.1:subseq_1420000,43000_ Strand: +
 Positions:
 -Exon 1  8416         8583
 -Exon 2  31113        31176
 -Exon 3  34493        34542
 -Exon 4  38397        38525

 Redox box: no

Query   LSAYGAELSSEACRELGFSSNLLCSSCDLLGEFSLAKLQPVCRQCCHQEAQMESRK <---Intron---> LYAGAILEVCGUKLGRFPQVQA <---I
        /| || ||||||||/||||||||||||||||/| |  //  ||||| /||/ / || <  22529bp   > /||||||||||||||||||||| <   3
Target  ISTYGVELSSEACRDLGFSSNLLCSSCDLLGQFGLNGIETPCRQCCQEEARFDLRK                MYAGAILEVCGUKLGRFPQVQA      
        atatgggcttggtagcgttaatttattgccgctgtagagactacttcgggctgtaa                atgggacggtgtatgatccgcg      
        tccagtatccacggatgtcgattggcgattgatgtagtaccggaggaaacgtatga                tacgcttatgggatggtcata       
        aaatcggcaaaacgctgtctcaaccctcggggtagtgtaatcagccgagacttaag                gttcttagctaaagggctacg       
                                                                                           *                

Query   ntron---> FVRSEMPKMFKGLQIK <---Intron---> YVRGSDPILKLLDDNGNIAEELSITKWNTDSVEEFLSEKLDRI
        316bp   > ||||/ ||/||||||| <   3854bp   > |||||||/||||||||||/||||||||||||||||||||| |/
Target            FVRSDKPKLFKGLQIK                YVRGSDPVLKLLDDNGNISEELSITKWNTDSVEEFLSEKLYRL
                  tgaagacactagccaa                tgcgtgcgcatcggagaatggcaaaataagagggtcagattct
                 cttggaacattagtata                atggcacttattaaagatcaatgtcagacagtaattgaatagt
                 ttcgttgcgtcgtgacg                tgtctttaggggtccgcctaaccccagcactaaatataggcta
                                                                                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1756 ; UGA-SECIS: 1963

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = BLSH010355584.1:subseq_1420000,43000_ Strand = + Positions = 40282 - 40368
 Found by:  Infernal (score=25.24) Covels (score=20.07)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -8.04

         ..(((((((................(((((((((((((((...............)))))))).)))))))..........)))))))..
 model   uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccag-gcCuGAUGuu-u-uuucaugaccggc
         ..(((((((................{[[((((([(((((......-..........)))))]).))))]]}......-.-.)))))))..
 target  GACACAUUAGGGUCAUGCACUUUAGUGAAGACUACACAGAAAACC-GUCCGAAGGCUUGUGGAUGUCUGAUGUCCUG-U-GUAAUGUGCC
                                  ****          ^^^                         ****                   