_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-15
 Query name: gi|928014420|ref|XP_013877637.1| PREDICTED: migration and invasion enhancer 1-like [Austrofundulus limnaeus]
 Query range: 1-95  (total 95)

 Target: /data/www-rg/seblastian_results/309919225/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000671.1:subseq_1668117,100000_ Strand: -
 Positions:
 -Exon 1  51248        51276
 -Exon 2  50960        51057
 -Exon 3  50739        50815
 -Exon 4  50000        50080

 Redox box: YES

Query   MGVKIKVEYC <---Intron---> GRUGYEPRYRELAQVVQAEFPEAEVSGFVGRTG <---Intron---> SFEVEINGQLVFSKLETNGFPYEDD
        ||/||||||| <   190bp    > ||||||||||||   |/ |/|/|/||||||| | <   144bp    > |||/|/| ||/|||||| ||||///
Target  MGLKIKVEYC                GRUGYEPRYRELHDAVKREYPDADVSGFVGRQG                SFEIEVNEQLIFSKLETAGFPYDEE
        agtaaaggtt                gatgtgcctcgccgggacgtcggggtgtggacg                atgaggagccattacgaggtctggg
        tgtatataag                ggggaacgagataactagaacacatcgttgga                ggtatataaatttcataccgtcaaaa
        gggacacac                ctaagcacctggccttcgtgcctgtgaccgaaa                cctgtaccgggcccgtgcagcctcga
                                    *                                                                       

Query    <---Intron---> ILNAVQDACDGKPVQKITKSRAPCVIM
         <   658bp    > /// /|/   |||/|||||||  |/||
Target                  VMDQLQEGYKGKPMQKITKSRPSCIIM
                        gagcccggtagacacaaaaaccataaa
                        ttaataagaagactaatcaggcggttt
                        cgtatgaccgcatgggccactatcccg
                                                   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 199 ; UGA-SECIS: 445

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000671.1:subseq_1668117,100000_ Strand = - Positions = 49800 - 49727
 Found by:  Infernal (score=29.25) Covels (score=23.35)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -22.79

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((((((.......{[[{(((((((((((........-----..)))))))))))}]]}......-...))))))...
 target  UCCUCCAGGCUGUUAAUGAUUACUGUAGCCUAAAAGGUU-----AAGGGUUACGGUAUGAUGAAUUC-AUUCCUGGAAAU
                         ****           ^^^                       ****