_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-34
 Query name: gi|1035275859|ref|XP_008312201.2| PREDICTED: redox-regulatory protein FAM213A-like [Cynoglossus semilaevis]
 Query range: 2-217  (total 221)

 Target: /data/www-rg/seblastian_results/428822435/tempfiles/temptarget.fasta
 Chromosome: JACSYO010001669.1:subseq_3609,100000_ Strand: +
 Positions:
 -Exon 1  49688        49838
 -Exon 2  49992        50083
 -Exon 3  50736        50876
 -Exon 4  51009        51173
 -Exon 5  51272        51370

 Redox box: YES

Query   MAEGVVVRVVSSFFGLFRAVMNFVTNVFLTPPLKATLKHLEETELKTLTGE <---Intron---> PITLKAKSLWDKSGAVVMAVRRPGUFLCRE <-
        || |//   |//  ||   |||| |//||||||||||/ ||/ ||||| || <   153bp    >   ||||/||| |||||/||||||||||||| < 
Target  MAMGLIAGAVAAVGGLVAGVMNFFTDIFLTPPLKATLERLEKAELKTLKGE                TWTLKARSLWAKSGAVIMAVRRPGUFLCRE   
        agagcagggggggggcggggaattagatcacccagacgctgaggcaatagg                atacagatctgatgggaaggcacgttttag   
        tctgttcgctcctggttcgttattcatttccctacctagtaacatactag                acgctacgctgcacgctttctggcggttgga   
        gggaaacctgtacccccctggcccccctgtagggcgcgtgggtagatgaa                atgcgaggtggggcgtccggggatgatgcag   
                                                                                                   *        

Query   --Intron---> EAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEIFLDKK <---Intron---> KRFYGPRERKMGLLAFLRPGVWMN
          652bp    > ||||||||||||/|| ||||||||||||||||||| |||||||||/| <   132bp    > / |||||||||| ||||| |||||
Target               EAAELSSLKPQLEELRVPLYAVVKEDVGTEVQNFRSYFKGEIFLDEK                RSFYGPRERKMGFLAFLRVGVWMN
                     ggggcttcacccggcagcttgggaggggaggcatctttaggattgga                aattgccgcaagtcgtccgggtaa
                     accatcctacataatgtctacttaaatgcataatgcatagatttaaa                ggtagcgagatgttcttgtgtgta
                     gtaggctggcggggcgctgctggggccccgcgccagccgcgccgtag                gtttgctggggtctgcgtcggggc
                                                                                                            

Query   GLRAFQKGFMGNVLGEGFVLGGVFVIGRGEQ <---Intron---> GILLEHREIEFGDKVNINDVFQAVRRIPVELVP
        |||||/|||||||||||||||||||||||/| <    98bp    > ||||||||||||||||| || /| ||/  | /|
Target  GLRAFKKGFMGNVLGEGFVLGGVFVIGRGQQ                GILLEHREIEFGDKVNIEDVIRAARRVSQERMP
        gccgtaagtagagtgggtgcgggtgagcgcc                gaccgcagagtggagaagggacggaagtcgcac
        gtgctaagttgattgagtttggttttgggaa                gtttaagatatgaatataattgccggtcaagtc
        cggctggccgactgagctcctgccctcaagg                attggcggtatatacctatccatcaaaaaaagt
                                                                                        
 Sequence until next stop: 
TTTTAG
 F  * 

 Distance CDS-SECIS: 110 ; UGA-SECIS: 530

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010001669.1:subseq_3609,100000_ Strand = + Positions = 51481 - 51551
 Found by:  Infernal (score=40.14) Covels (score=34.82)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -24.12

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....{[[{((((((({(((.....--........)))})))))))}]]}..--..-.)))))))).
 target  UCUGAGUGUG--UUAAUGAUGGUCUGUCUUUAAACU--CCAAGAGAGGAAGCAGACCUGAUGU--CU-AACACUCAGU
                         ****           ^^^                       ****