------- SECIS element -- id:1 -- grade:A ---- Chromosome = JACSYO010001703.1:subseq_872421,100000_ Strand = + Positions = 54756 - 54832 Found by: Infernal (score=24.36) Covels (score=28.38) Stem2 length = 9 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -12.39 ..(((((((.......(((((((((((((((................)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..([{({((---((..{[[{(((({{(((((................)))))}}))))}]]}......-.))))})}]).. target UGAAAGCUU---GUAAUGACGCCAUUCCUGUAAUCGGUAUGUAACCAGCAGGUUUGGCUGAUGAAUUU-CACAGUCAGUGU **** ^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = JACSYO010001703.1:subseq_872421,100000_ Strand = - Positions = 84815 - 84736 Found by: Infernal (score=14.19) Covels (score=12.23) Stem2 length = 8 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -4.53 ..(((((((.......(((((((((((((((...................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..([{(([(.......{[[{(((((({({{(...................)}})}))))))}]]}..--....)]))}]).. target GACAAGAAUACCAACAUGAAGUCCAGUCUUGAAGACAAUACAACUAUUUGUCUGUCUGGACAGAUCA--GCUCAGUCAGGGU **** ^^ ****