_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-31
 Query name: gi|908503296|ref|XP_013130818.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503300|ref|XP_013130819.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503304|ref|XP_013130820.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503308|ref|XP_013130821.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus]
 Query range: 1-158  (total 158)

 Target: /data/www-rg/seblastian_results/10753464/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000247.1:subseq_670188,100000_ Strand: +
 Positions:
 -Exon 1  48903        48998
 -Exon 2  49751        49786
 -Exon 3  50003        50037
 -Exon 4  50140        50218
 -Exon 5  50827        51054

 Redox box: YES

Query   MWLIVLASLFHCASAYDVDLKKLEGLARARVE <---Intron---> TCGGUQLNRLRE <---Intron---> VKAFVVQDIPLY <---Intron-
        |||| |||| |||||||||/|||/|||/|||| <   752bp    > |||||||||||| <   216bp    > |||||||||||| <   102bp  
Target  MWLIALASLLHCASAYDVDVKKLDGLAKARVE                TCGGUQLNRLRE                VKAFVVQDIPLY            
        atcagcgatcctgtgtggggaacggcgagagg                atggtccaacag                gagtggcgacct            
        tgttctcgttagcccaatataatagtcacgta                cggggatagtga                tactttaatcta            
        gggcggctaccccgtccgtggagcgggggagg                gttaaggcgcag                cgctgcgcttt             
                                                            *                                               

Query   --> HNLVMKHIPGADPELVLLNHYYEELD <---Intron---> RVALSDMTRSEINELLGKLGFYKKAQAEDEVPEEFRFSPAKDSPFKNEPAHQPS
          > |||||||||||||||||||||||||| <   608bp    > |/|||||/|||||||| /|||||| / |||||| ||||||||||||/|| // |
Target      HNLVMKHIPGADPELVLLNHYYEELD                RIALSDMSRSEINELLSELGFYKKTEPEDEVPEAFRFSPAKDSPFKDEPLYKSS
            cacgaacacgggcgcgccacttggcg                cagctgaactgaagccagcgttaaagcggggcggtcttcgagactaggcctatt
            aatttaatcgcacattttaaaaaata                gtctcatggcataattgatgtaaacacaaatcactgtcccaagctaaactaacc
           ctcggggcttgcctgtccgccttaggt                cccgtcgtctgccgggcggcccggtacgcgggggcccttcaccgcatggccaca
                                                                                                            

Query   SSSIATESASSEPSAEVKHTDL
         /|/||//||||| || |||||
Target  VASLATDNASSEPKAEAKHTDL
        ggtcgagagttgcagggacagc
        tcctccaacccacacacaacat
        gccccaccccagcaaacgctca
                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 392 ; UGA-SECIS: 755

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000247.1:subseq_670188,100000_ Strand = + Positions = 51447 - 51528
 Found by:  Infernal (score=39.53) Covels (score=30.81)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -35.68

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .(((((((((((.......{[[((((((((((((.....--........))))))))))))]]}........-))))))))))).
 target  UACCUACUGGGAAACCGAAUGAAGCCUCGGGCUGAAACC--GGUCUGACUGGCCCGAGGCUGAUGCUACAUG-UUCUGGUGGGUU
                            ****           ^^^                       ****