------- SECIS element -- id:1 -- grade:A ---- Chromosome = JACSYO010000981.1:subseq_217491,100000_ Strand = + Positions = 51132 - 51221 Found by: Infernal (score=25.31) Covels (score=26.47) Stem2 length = 10 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -21.23 ..(((((((.....................(((((((((((((((.................)))))))))))))))........))))))).. model uucggucaugcg--------------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ....((((((....................{[[{((({(((((((.................)))))))})))}]]}..--.--)))))).... target CAUCGGCUGCCGCUGCAACCAGCAGUUUCUUGACGCCUUUCUGGGAAUUCCUACACGUAGGGUCCAGAAUGGCCGAUGC--A--GCAGCCAUCC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JACSYO010000981.1:subseq_217491,100000_ Strand = - Positions = 32245 - 32171 Found by: Infernal (score=11.82) Covels (score=6.71) Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 1, 0 Free Energy = -7.15 ..(((((((.......((((((((((.((.(((..................))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gc-ccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc ...({{((((--....([[[(((((({--.((....................))--}))))))]]])..--..-))))}})... target UUAUUUUGGG--UGAAUGAAUCCUUUC--AGGGAAACUAUCACAACUAACAGCC--CAAAGGGGGAGGA--GU-CUCAUCACUA **** ^^^ ****