_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-43
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 1-400  (total 400)

 Target: /data/www-rg/seblastian_results/853333317/tempfiles/temptarget.fasta
 Chromosome: JACSYO010001293.1:subseq_172962,100000_ Strand: +
 Positions:
 -Exon 1  49991        50047
 -Exon 2  52537        52605
 -Exon 3  55467        55575
 -Exon 4  56839        56913
 -Exon 5  59846        60108
 -Exon 6  60191        60299
 -Exon 7  60603        60651
 -Exon 8  60743        60923
 -Exon 9  61074        61253
 -Exon 10 62121        62225

 Redox box: no

Query   MALYHYVTQEQLSGFDKYK <---Intron---> YSAVDSNPLSIYVMHPFWNSVVK <---Intron---> VLPTWLAPNLITFTGFMFLVLTFTML
        |||| ||||/||/|||||| <   2489bp   > ||||||||||/|||||||| ||| <   2861bp   >  |||||||||||||||||||| | ||
Target  MALYEYVTQDQLAGFDKYK                YSAVDSNPLSVYVMHPFWNFVVK                FLPTWLAPNLITFTGFMFLVLNFLML
        agctgtgacgccggtgata                tagggtacttgtgaccttatgga                tccattgcacaatagtatcgtatcat
        tctaaatcaaatcgtaaaa                agctacactctattactgattta                ttccgtccattctcgttttttatttt
        gttcatctgcgtgcccacg                ccggcctcgtcccgctcgctagg                taaaggtacctatactgctggtccgg
                                                                                                            

Query   SFFDFDFYASG <---Intron---> EGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        /|/|||| ||  <   1263bp   >  || |||||||/|||/||||||||| <   2932bp   > |||||||||||||||||||||||||||||/||
Target  AFYDFDFTASA                AGHEHVPSWVWVAAGIFNFLAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACIFF
        gttgtgtagtg                ggcgcgcatgtggggatattgtacg                ggggacgccaattaccggctgcgcgatgtatt
        ctaatatccc                ccgaaatcggtgtccgttattcact                agtagaacggcacccctgattaagtaggcgttt
        cccctcctct                taatacgttgcgttagccctgctac                tttctagatcccccaaagggtctcgctgccccc
                                                                                                            

Query   VATVYSVFGRGETGVSVVTLYYLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRD
        ||||||/|||||/|| | ||||/|||||||||||||||||||||||||||||||| <    82bp    > |||/||//||||||||||/|/  /  |||
Target  VATVYSIFGRGESGVGVATLYYILWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISLVYLVTAVVGVETWYQPILWSFLYRD
        ggagttatgcggagggggacttactggctttactctgataagattcctgtgaacg                aatcgttgaggggggattccactatctag
        tcctacttgggaggtgtcctaattgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaacttggttaga
        gcccccatgtaatcgtgcagtccgggggcactatcggatctccgtgagaccccag                atccttgcttgccgaagcgacggccctac
                                                                                                            

Query   LFTVMIIG <---Intron---> CLFVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQ
        ||| |||  <   303bp    > | | ||/||||||| | <    91bp    >  /|/||||||||||| ||| |||||| |||/|/ |||/||// |
Target  LFTFMIIA                CSFTVTVPMSLYNVLK                GHRSNTLKHSSLYEAFLPFLSPVLLFALSTIWVVFSPSNILELQ
        ctataaag                tttagagcaactagca                gccaaacacaactggtcctctcgcctgttaatggttctaacgcc
        ttctttt                cgctctctctgtaatta                gaggactaaggtaacttcttccttttctcctgtttcccattata
        tcgtgac                ctcttgcacgccctcg                atcctctggcccgcaccaccgtccgcccgcttggcctaccctggg
                                                                                                            

Query   PRIFYLMVGTAFSNVT <---Intron---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---In
        ||||||||||||/||| <   150bp    > |||||||||||||/ || |||||/ |||| /|| |   | |/|//||  |/| |||||||| <   86
Target  PRIFYLMVGTAFANVT                CKLIVCQMSNTRCQALSWLLLPMTPVVLLAVSGVV-ANEILLLYLWTTAVILAHIHYGVSV       
        caattcaggagtgaga                tacagtcaaaactcgcatctccaacggttggtggg-gagaccctctaaggacgcactggtg       
        cgttatttgcctcatc                gatttgatgacggactggtttctccttttctcgtt-caattttatgccctttcataagtct       
        cgccccgggacctttg                tggtctggtcatcgggcggggcggagggggatgcc-ccgcagatggactcaaacccccgag       
                                                                                                            

Query   tron---> VKQLSDHFNIFAFSLKKPNSDUQDEEKIGLKAAEV
        7bp    > |/|||/||/| ||||||||||||/ |/|||| |||
Target           VQQLSNHFSILAFSLKKPNSDUQEAERIGLKEAEV
                 gcccaactaatgttcaacaagtcgggcagtagggg
                 taatgaatgttctctaacagagaacagtgtaacat
                 aagcccccccgcccgggtctcagggggtcgaatgt
                                      *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1118 ; UGA-SECIS: 1157

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010001293.1:subseq_172962,100000_ Strand = + Positions = 63344 - 63417
 Found by:  Infernal (score=25.97) Covels (score=23.23)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -13.97

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({(([(.--....([[(((((({((((..................))))}))))))]])..--..-.)]))}))..
 target  GCGCAGCGCU--UGAAUGAAGAGUGCGUUCAAAAACCGUUAACGGAGCGGACCCACUCUGAGGG--AA-CGAGCCGUCG
                         ****          ^^^                         ****