_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-22
 Query name: gi|1035250417|ref|XP_008325246.2| PREDICTED: selenoprotein H [Cynoglossus semilaevis]
 Query range: 7-103  (total 107)

 Target: /data/www-rg/seblastian_results/517199212/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000469.1:subseq_3161813,100000_ Strand: -
 Positions:
 -Exon 1  51980        52107
 -Exon 2  50902        51064

 Redox box: YES

Query   RRGTKRKAEAALEEKPCVEDNKETNSGEEGNGHGGQRVVIEHC <---Intron---> KSURVYGRNAEEVKTAILAAHPELTVILNPEKPRRNSFEIT
        |||||||||   ||/      |/    |/  | |||/|||||| <   915bp    > ||||||||/||||/||/|||||/|||/ ||||||/ /||||
Target  RRGTKRKAEVEAEEEKPSVGEKKDRGEEKEKGQGGQKVVIEHC                KSURVYGRHAEEVRTALLAAHPDLTVVFNPEKPRKKTFEIT
        ccgaacaggggggggactgggaagagggagagcggcaggagct                aatcgtgccggggaagccggccgcaggtacgaccaaatgaa
        gggcagacatacaaaacctgaaaaggaaaaagaggaatttaag                agggtaggacaatgccttccacatctttacaacgaactatc
        tcggacaggtggaggaacgggggcaagggggcaacaggctac                tgcaagtgtttgggacccgtcttcgggcccagaccaactgct
                                                                     *                                      

Query   LVDGGKGEEDEKG
        |/| |||||||/|
Target  LLDEGKGEEDERG
        ccgggagggggag
        ttaagagaaaagg
        ggtacatggcaga
                     
 Sequence until next stop: 
ATATCCCATTTTGTGAAAACATCTCCGTCATACAGCTGA
 I  S  H  F  V  K  T  S  P  S  Y  S  * 

 Distance CDS-SECIS: 2380 ; UGA-SECIS: 2533

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000469.1:subseq_3161813,100000_ Strand = - Positions = 48521 - 48436
 Found by:  Infernal (score=22.15) Covels (score=33.2)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -18.64

         ..(((((((...................(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(((({(...................{[[{((((((((((......-..........))))))))))}]]}..--..-.)}))))...
 target  UCAGGAGGUGUGGUCCGUGGAAGCCGAAUGAUGAGGAGUGACCAAUGG-GAUGCUCCCAGUCGCUCCUCUGAUGA--CU-AAGCUCCAAC
                                     ****           ^^                        ****