_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-21
 Query name: gi|1042301059|ref|XP_017346835.1| PREDICTED: 15 kDa selenoprotein [Ictalurus punctatus]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/805891775/tempfiles/temptarget.fasta
 Chromosome: JACSYO010001861.1:subseq_2659194,100000_ Strand: -
 Positions:
 -Exon 1  55224        55271
 -Exon 2  53891        54058
 -Exon 3  50951        51014
 -Exon 4  50363        50412
 -Exon 5  50000        50128

 Redox box: no

Query   MAAEVYLLWLLPLLQS <---Intron---> LAAFGAELSSEACRELGFSSNLLCSSCDLLGQFSLSPIEPFCRQCCQEEAQLESRK <---Intron-
        |/ |||||||| |/|/ <   1165bp   > |/|/||/||||||||||||||||||||||||/|||/ //| ||||||/|||/|/|| <   2876bp 
Target  MSGEVYLLWLLSLIQT                LSAYGADLSSEACRELGFSSNLLCSSCDLLGEFSLTTLQPECRQCCQQEAQMEARK            
        atgggtcctcctcaca                ctgtgggcttggtagcgttaacctattgccggtacaacccgtccttccggcaggca            
        tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtcctacaggaggaaacatacga            
        ggaggtcggtcgtaag                gggttctggtgacgggcccccggccctcgcggccccgggtacggccgggcggagcg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > || ||||||||||||||||||| <   538bp    > |||||||||||||||| <   234bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKMFKGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtatgatccgcg                tgaagacaatagccaa                tgagtgcgcactggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacattagtata                atggcacttattaaagatcaatgtta
            cctgcccggtaaagggctaca                ttcgtcggggcgttgcg                cgactttaagtgctcgcctaaccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggtcagatgca
        gacagtaattgaatagt
        gcaccgggcgtgaacga
                         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 871 ; UGA-SECIS: 1078

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010001861.1:subseq_2659194,100000_ Strand = - Positions = 49128 - 49055
 Found by:  Infernal (score=39.0) Covels (score=34.26)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -19.92

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((({(((((--....{[[(((((((((([(.....--........)]))))))))))]]}.....-..)))))}))))
 target  GAAGCACACG--UUAGUGAAGACCUCACAGUAAACC--AGUGUUGGGAUGUGAGGUCUGAUGUAAA-UUUGUGUUUUUU
                         ****           ^^^                       ****