_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-42
 Query name: gi|928014133|ref|XP_013876265.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Austrofundulus limnaeus]
 Query range: 23-192  (total 192)

 Target: /data/www-rg/seblastian_results/88259708/tempfiles/temptarget.fasta
 Chromosome: JACSYO010001924.1:subseq_1575297,100000_ Strand: -
 Positions:
 -Exon 1  50599        50696
 -Exon 2  50247        50391
 -Exon 3  49998        50149
 -Exon 4  48501        48525
 -Exon 5  48339        48398
 -Exon 6  47805        47834

 Redox box: no

Query   MCAQVGDWQSAKSIYEFSAKDIDGEEVXLEKYR <---Intron---> GHVCIIVNVASKUGKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ <-
         |||| ||||||||||||| |||| || ||||| <   207bp    > |/||||||||||||||/|||||||||||||||/||||/|||||||||| < 
Target  QCAQVADWQSAKSIYEFSANDIDGNEVSLEKYR                GNVCIIVNVASKUGKTKVNYTQLAGMHASYAEQGLRIMGFPCNQFGGQ   
        ctgcgggtcagatatgttgagaggaggtcgata                gagtaagaggtatgaaagataccggacgttggcgtcaagtctactggc   
        agcatcagagcactaatccaatagaatctaaag                gatgtttatccaggacataacatcgtaccacaagtgttgtcgaatgga   
        gtaagacggtcgaccgctcttttctggttgac                aattcctatactaaagcgacctgagagcccctgataccgcccccgtaag   
                                                                     *                                      

Query   --Intron---> EPGTDAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKSQPKGKGTFGN <---Intron---> NIKWNFTK <---Intron-
           97bp    > ||||||||||||||| ||||||||||||||||||||||||/||||||| || <   1472bp   > |||||||| <   102bp  
Target               EPGTDAEIKEFAKGYKAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGTLGN                NIKWNFTK            
                     gcgagggaagtgagtaggtgctaaaggaggagccctataagccagagatga                aaatataa            
                     acgcacataatcagaacatattgatatagaacactgagtacacagagctga                atagatca            
                     gagtttgtaatcatcacgtccctgtggtacctctggggggagggcaacaa                tccagccag            
                                                                                                            

Query   --> FLIDKEGQVVKRYGPTDDPS <---Intron---> VVEKDLPTYM
          > |||/|||||||||||||||| <   504bp    > |||||||||/
Target      FLINKEGQVVKRYGPTDDPS                VVEKDLPTYL
            tcaaaggcggaatgcaggca                gggagccatc
            tttaaagattagagccaacg                ttaaatccat
            tgttaaaggggacgaattcc                ggggcgtccg
                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 67 ; UGA-SECIS: 439

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010001924.1:subseq_1575297,100000_ Strand = - Positions = 47737 - 47658
 Found by:  Infernal (score=38.21) Covels (score=36.01)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -16.62

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (({(((({((......{[[{((((((((([(...............)])))))))))}]]}.......-..))}))))}))
 target  UGUUUGUCUGGACCAGUGACGGCCUGUCUGUAAACCCACCAUUGGGAAGGACAGGCCUGAUGAUCCUC-AGCGUGCAACUA
                         ****           ^^^                       ****