------- SECIS element -- id:1 -- grade:A ---- Chromosome = JACSYO010000535.1:subseq_18909,100000_ Strand = + Positions = 51720 - 51797 Found by: Infernal (score=22.48) Covels (score=23.09) Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -8.71 ..(((((((.......(((((((((((((((................)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..(([([((.--....([[[(((((((({(..................)}))))))))]]])......-...))])])).. target GAUGGCAUGU--UGAAUGAAGAGGAGGCUUGAAAACAGGAAAUCUGUGGUGCCUCUUCGGAGUCUGGG-CUUCAGGACGGG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JACSYO010000535.1:subseq_18909,100000_ Strand = + Positions = 7273 - 7368 Found by: Infernal (score=15.01) Stem2 length = 11 Apical loop length = 28 Insertion in stem2 = 0, 0 Free Energy = -20.28 ..(((((((...........(((((((((((((................................)))))))))))))..........))))))).. model uucggucaugcg----UuaAUGAcGgccuggcccgAAAcCcuuuuuggggug-------------ggccaggcCuGAUGuu-u-uuucaugaccggc ...((((((((.........{[[((((((((((((............................))))))))))))]]}......-.))))))))... target GUCAUGUUUGCUGUACUUGAUGAGAAGAGAGGUGAGCACAUGUCUGAUUGAAACAUGGUUGGAUUACUUCUCUUUGAUCCAGUC-UGCAAACAUUUA **** ****