_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-59
 Query name: gi|835868918|ref|XP_012777272.1| PREDICTED: glutathione peroxidase 2 [Maylandia zebra] >gi|923840712|ref|XP_013768723.1| PREDICTED: glutathione peroxidase 2 [Pundamilia nyererei]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/262176924/tempfiles/temptarget.fasta
 Chromosome: JACSYO010002173.1:subseq_808742,100000_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  50795        51145

 Redox box: no

Query   MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCTNGEILN
        ||||||||||||||||||||/|||||||||||||||||||||||/||/|||||||||||||||||||||||||| <   573bp    > ||| ||||||
Target  MTFIAKTFYDLRATTLEGDSLDFNVFRGRVVLIENVASLUGTTTQDFNELNQLQSKYPHRLVVLGFPCNQFGYQ                ENCGNGEILN
        aatagaattgcagaacgggtcgtagtcgcggcagaggtctgaaacgtagcacccaatccccggcgtctactgtc                gatgaggaca
        tcttcactaatgccctagactatattgggttttaatcctggcccaataataatagaacagttttgtcgaatgaa                aaggagatta
        ggcccgccccgaccgggacggtccgtgaggcgagtgctcaccccgcccgccgcgcgcccgagcgttctcgtatg                gcccttgcgt
                                               *                                                            

Query   SLQHVRPGGGFKPIFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPNSLIQDPKFLVWSPISRTDISWNFEKFLIGPEGEPFKRYSKKFPTIDIEPDIQR
        ||/||||| ||/| |||||||/||||/||||||||||||||||||| | /|||||||||||||||/||||||||||||||||||||||||||||||||||
Target  SLKHVRPGDGFQPSFTIFEKCNVNGTSTHPVFAYLKDKLPYPDDDPTSFMQDPKFLVWSPISRTDVSWNFEKFLIGPEGEPFKRYSKKFPTIDIEPDIQR
        tcacgccgggtccataatgatagagaaaccgtgtcagacctcgggcattacgcatcgtacaaaaggttatgatcagcgggctaataaatcaagagcgaca
        ctaatgcgagtacgtcttaagatagcgcacttcataaatcacaaacccttaacatttggctggcatcgataatttgcagactagagaatcctatacatag
        cgatgtaccctacctcctggttccgacattctctcatgccctttcccccggccgtgtgtcccggccagctgatctgggagctaaccaaccctctgtctga
                                                                                                            

Query   LLRLTKT
        |||||||
Target  LLRLTKT
        ctataaa
        ttgtcac
        gaaacac
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 74 ; UGA-SECIS: 527

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010002173.1:subseq_808742,100000_ Strand = + Positions = 51220 - 51287
 Found by:  Infernal (score=26.48) Covels (score=16.19)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -14.2

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ....(((((---....([[{(((((((((((......-..-----...)))))))))))}]])..--..-.)))))....
 target  AAGCCUUAU---UAAAUGACGGUGAUAUUCUGAAAAG-CA-----GAGGGAAUAUUACCUGAGGC--CU-UAUAAGUGCU
                         ****            ^^^                        ****