_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-69
 Query name: gi|428160949|gb|AFY97791.1| glutathione peroxidase 1b [Sparus aurata]
 Query range: 2-186  (total 187)

 Target: /data/www-rg/seblastian_results/778737643/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000471.1:subseq_2850773,100000_ Strand: -
 Positions:
 -Exon 1  51406        51615
 -Exon 2  49994        50338

 Redox box: no

Query   AKFYDLTAKLLTGETFKFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILMSLKY
        ||||||/||||||||| ||||||||||||||||||||||||||||||||/|||||||||||||||||||| <   1067bp   > |||||/||||||||
Target  AKFYDLSAKLLTGETFNFSSLQGKVVLIENVASLUGTTTRDYTQMNELHQRYAGKGLVILGVPCNQFGHQ                ENCKNEEILMSLKY
        gattgctgactaggatatttccgaggcagaggtctgaaaagtacaagcccctggagcgacggctactgcc                gataaggacatcat
        cataatccattcgactatcctagattttaatcctggcccgaacataataagacgagttttgtcgaatgaa                aagaaaatttctaa
        ggtcccgcacaaaagcccccggcaccccgtcgtcatgccgcctggcgccggcccggcgcgagcccgcctg                gccgtgaccgtggt
                                          *                                                                 

Query   IRPGNGFEPKFQLLEKVDVNGKDAHPMFVFLREKLPFPSDEPSALMTDPKLIIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRRFLTSDIEGDIKKLLEK
        ||||||||||||||||||||||||||/||||| |||||||||/||/||||||||||||||||||||||||||||| ||||||| |||||||||||||| /
Target  IRPGNGFEPKFQLLEKVDVNGKDAHPLFVFLRGKLPFPSDEPNALITDPKLIIWSPVCRNDVAWNFEKFLIGPDGEPFKRYSRLFLTSDIEGDIKKLLSQ
        accgagtgcatcccgagggagaggccctgtcagacctcaggcagcaagcataatacgtaagggtatgatcagcgggctactaactcaagagggaaaccac
        tgcgagtacatattaatatagaacactttttggatctcgaacacttcacatttggctggaatcgataatttgcagactagaggtttcgatagataattga
        cttatccgagcgcggagcgcgacctcgtgcggggcgccccggccgttccggccgcgccgccgcgctggcccggtaggcgcccggccccccggccggcccg
                                                                                                            

Query   A
        |
Target  A
        g
        c
        g
         
 Sequence until next stop: 
GCCTAA
 A  * 

 Distance CDS-SECIS: 158 ; UGA-SECIS: 608

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000471.1:subseq_2850773,100000_ Strand = - Positions = 49835 - 49761
 Found by:  Infernal (score=36.31) Covels (score=25.49)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -14.65

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[((({(((((((....................)))))))})))]]}..--..-.)))))))..
 target  UUCUUUUAC---AAUAUGAAGGCAUCCUCUGAAACCAAGUUAUUUGUGAGGGGGGGUAUCUGAUGA--AG-CGUAAAAGCC
                         ****           ^^^                          ****