_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-69
 Query name: gi|361050316|dbj|BAL41419.1| glutathione peroxidase GPx1a [Thunnus orientalis]
 Query range: 3-189  (total 189)

 Target: /data/www-rg/seblastian_results/553242233/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000406.1:subseq_760175,100000_ Strand: +
 Positions:
 -Exon 1  50012        50224
 -Exon 2  51017        51364

 Redox box: no

Query   VRRFYDLTVKLLSGETFSLSALKGKVVLIENVASLUGTTTRDYTQMNELHSRYSDKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILRSLK
        |||||||| ||||||/|| |/||||||||||||||||||||||||||||||||| |||||||||||||||| <   792bp    > |||||||||||||
Target  VRRFYDLTAKLLSGESFSFSSLKGKVVLIENVASLUGTTTRDYTQMNELHSRYSTKGLVILGVPCNQFGHQ                ENCKNDEILRSLK
        gaattgcagacctggatatttcagaggcagaggtctgaaaagtacaagccacttaagcgacggctactgcc                gataaggacatca
        tggtaatccattcgagtgtcctagattttaatcctggcccgaacataataggaccagttttgtcgaatgaa                aagaaaattgcta
        ggatccgatgggtaacctctcggtgtcctgtggtgaaaacgcctggcgcctgcccgccttgtgcttgtatg                gccgttacagtgg
                                           *                                                                

Query   YVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMALMNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADIKELLK
        |/|||| ||| ||||||||||| |||||||||||/|| ||||||||| |||||/|||||||||||||||||| |||| ||||||||||||||||||||||
Target  YIRPGNAFEPKFQLLEKVDVNGADAHPLFVYLKEKLPFPCDDAMALMTDPKFIMWSPVSRNDVSWNFEKFLVGPDGEAYKRYSRNFLTIDIEADIKELLK
        taccgagtgcatcccgagggaggggccttgtcagacctctgggagcaagcataatacgaaaggttatgatcggcggggtactaaatcaagagggaagcca
        atgcgactacatattaatatagcacactttataaatctcgaactcttcacatttggctggaatcgataatttgcagacaagaggattctatacataatta
        tctagtctacgcgctgggtatagtccggtgtggagcacctctcgtcgttagccggtcctgtcccgctggcacttcggccgcccatccctctaattagggg
                                                                                                            

Query   RVK
        |||
Target  RVK
        aga
        gta
        gcg
           
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 156 ; UGA-SECIS: 609

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000406.1:subseq_760175,100000_ Strand = + Positions = 51521 - 51591
 Found by:  Infernal (score=38.45) Covels (score=31.05)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -10.62

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((---....{[[((({((((((((.....--........))))))))})))]]}..--....)))))})..
 target  CCUAUUUAC---UCAAUGAAGACACUCUUUGAAACC--UUUUUGCGUGGGGAGUUUCUGAUGA--GCAUGUAAAAGAC
                         ****           ^^^                       ****