_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-147
 Query name: gi|171855140|sp|A7YD35.2|IOD3_SPAAU RecName: Full=Thyroxine 5-deiodinase; AltName: Full=5DIII; AltName: Full=DIOIII; AltName: Full=Type 3 DI; AltName: Full=Type III iodothyronine deiodinase >gi|116734194|gb|ABK20156.1| iodothyronine deiodinase 3 [Sparus aurata]
 Query range: 1-267  (total 267)

 Target: /data/www-rg/seblastian_results/975557492/tempfiles/temptarget.fasta
 Chromosome: JACSYO010000262.1:subseq_867287,100000_ Strand: -
 Positions:
 -Exon 1  49979        50779

 Redox box: no

Query   MHDSGGVQMARALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGERQDGPDDPPVCVSDSNKMFTLESLRAVWYGQKLDFLKSAHLGRTAPNTE
        |||||||/ |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Target  MHDSGGVKTARALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGESQDSPDDPPVCVSDSNKMFTLESLRAVWYGQKLDFLKSAHLGRAAPNTE
        acgtgggaagagcacggctcacccctccgggactccgtttaaaagccaaggacgacggccgtgtgtaaatatgtcaggttgcatgtcatgccgcggcaag
        taacggtaccgctaacctgttttcgtttcctttgttattgtgaatttatgagaagcaacctgtcacaattctactgctgagaatattaccatggcccaca
        gcctctcaggggggtacgcggggcgccgcccgggcgtcgttgaagggagagtgccgccgggcctcctggccggccgcggccgagctcaggccgcggcccg
                                                                                                            

Query   VMLVQERRQVRILDCMKGKRPLILNFGSCSUPPFMTRLAAFQRVVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAAQLMLAEVPGS
        ||||||||||/||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||/|||||||||
Target  VMLVQERRQVQILDCMKGKRPLILNFGSCSUPPFMTRLTAFQRVVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAARLMLAEVPGS
        gacgcgcccgcacgtaagaaccacatgatttcctaaccagtccggactggaggttggtagggcctggtgatggctcacaccttggaccggccacgggcga
        ttttaaggatattagtagagctttatgggcgccttcgtcctagttgaacatcattttataacaccaggtgcaccaatcaaggtaagtgccgtttcatcgg
        gggcgggggcgcgccgaggagcctctccccagacggtgggtgccgcgcgctgctatatcgggtggccggcgcggtgccgcccggcacactgggccggcgc
                                      *                                                                     

Query   NVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRGPEGYRISELRNWLEQYRNGLVNSQTAVLHV
        |||||||||||||||||||||||/|||||||||||||||||||||| |||||||| | /||||||||
Target  NVVVDNMDNSSNAAYGAYFERLYVVRDERVVYQGGRGPEGYRISELTNWLEQYRNELAHSQTAVLHV
        aggggaagattaggtggttgactggaggaggtcggagcggtcatgcaatcgctaagcgctcaggccg
        atttaataaccaccagcatagtattgaagttaaggggcagagtcatcagtaaagaatcacaccttat
        cgggttgccgcccgcacctgatccggtgaggcggcgtggacgtcgcacgggacgcgggtcaaggctg
                                                                           
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 445 ; UGA-SECIS: 853

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JACSYO010000262.1:subseq_867287,100000_ Strand = - Positions = 49533 - 49461
 Found by:  Infernal (score=31.36) Covels (score=23.8)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -21.44

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         (((((((((---....{[[((((((((((((.....-.........))))))))).)))]]}..--....)))))))))
 target  UCUGGUGUU---UCUGUGAAGUUCGGUUUUUAAAAG-GCGACGCCAGAAAACCGACACUGAUGU--UUCUGACACCGGA
                         ****           ^^^                        ****