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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 4e-05
 Query name: gi|27807129|ref|NP_777050.1| thioredoxin reductase 1, cytoplasmic [Bos taurus] >gi|190359068|sp|O62768.3|TRXR1_BOVIN RecName: Full=Thioredoxin reductase 1, cytoplasmic; Short=TR; AltName: Full=Thioredoxin reductase TR1 >gi|2997700|gb|AAC13914.1| thioredoxin reductase [Bos taurus] >gi|296487626|tpg|DAA29739.1| TPA: thioredoxin reductase 1 [Bos taurus]
 Query range: 85-499  (total 499)

 Target: /data/www-rg/seblastian_results/783393399/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000019.1:subseq_51581835,128979_ Strand: -
 Positions:
 -Exon 1  69716        69886
 -Exon 2  69210        69325
 -Exon 3  67301        67526
 -Exon 4  65530        65622
 -Exon 5  64878        64954
 -Exon 6  63274        63430
 -Exon 7  56335        56442
 -Exon 8  53857        53952
 -Exon 9  50003        50137
 -Exon 10 44672        44737

 Redox box: no

Query   NYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIK <---Intron---> ATNNKGKEKIYSAERFLIATGERPRYL
         /|  /   | |||||||||||||||||||||||||||||||||||||||||||||| <   390bp    > |||||||||||||||||||||||||||
Target  EHGVCLSLAVTHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIK                ATNNKGKEKIYSAERFLIATGERPRYL
        gcggtctcggacgtgaaagggcacagtcatgtcggccgaagatgagtggtggccaaa                gaaaagagaattggatcagaggacctt
        aagtgtctctcaagagtcactaaatgctaggagtctgaaatcaaacagattgcagta                ccaaagaaataccagtttccgagcgat
        gttcttttatatcggagaggcgcctctccgcccgtgggagcccgtgcggtggtcgtg                aatcacaggtcaagatctcttaggttg
                                                                                                            

Query   GIPGDKEYCISS <---Intron---> DDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGIKFIRQFV
        |||||||||||| <   1683bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GIPGDKEYCISS                DDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGIKFIRQFV
        gacggagttaaa                ggcttccttcgaacggggttggtgtggtcggagtggagagctaccagtgcgagaaaggcacgcgaataactg
        gtcgaaaagtgg                aattctcagcgactttgccatctagcgttcgtgtatctttgctttggtaaatcaatgaataaagtattgatt
        tcttcaactcc                ttttctattcttgcggcaactttgattattttttaccttgaactcaaatcgcgccattatgaattcgcaagta
                                                                                                            

Query   PIK <---Intron---> VEQIEAGTPGRLRVIAKSTDSDQTIEGEYNT <---Intron---> VLLAIGRDACTRKIGLENVGVKINEK <---Int
        ||| <   1678bp   > ||||||||||||||/||||/||||||||||| <   575bp    > |||||||||||||||||||||||||| <   144
Target  PIK                VEQIEAGTPGRLRVVAKSTNSDQTIEGEYNT                VLLAIGRDACTRKIGLENVGVKINEK        
        caa                ggcagggacgccagggataaagcaagggtaa                gtcgagaggtaaaagtgagggaaaga        
        cta                taatacgccggtgttcaccagaactagaaac                tttctggacgcgatgtaatgtataaa        
        aaa                taatgagcccagagatgctttcactaaattg                aggaaaattcgaatcaatggagata         
                                                                                                            

Query   ron---> TGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK <---Intron---> CDYENVPTTVFTPLEYGSCGLSEE
        7bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| <   6831bp   > ||||||||||||||||||||||||
Target          TGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK                CDYENVPTTVFTPLEYGSCGLSEE
                agaacgagggcaagctatgaggatggacgcacggacggaccgcactggtaga                tgtgagcaagtactgtgttgctgg
                cgatctcaaaacatcatactgattagatatcctctacggttcagtaggccta                gaaaatcccttcctaagcggtcaa
               gtaaatcagaggccgtcctctttcggggggccggccgaagggtgggctcctcg                cctactagttcttgatgtttttgg
                                                                                                            

Query   KAVEKFGEENVE <---Intron---> VYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDN <---Intron---> ERVVGFHVLGPNAGEVTQGFAAAL
        |||||||||||| <   2382bp   > |||||||||||||||||||||||||||||||| <   3719bp   > ||||||||||||||||||||||||
Target  KAVEKFGEENVE                VYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDN                ERVVGFHVLGPNAGEVTQGFAAAL
        agggatgggagg                gtcatttctgtaactagaaattgaggtaaaga                gcgggtcgcgcaggggacgtgggc
        actaatgaaata                taagatgctagctccgaaaagacattgataaa                agttgtattgcacgatcagtccct
        atggatgaattg                ttttctgagaggtaaatccattaaacctcact                attgcccagtattaggcggcaggc
                                                                                                            

Query   KCGLTKDQLDSTIGIHPVCAE <---Intron---> VFTTLSVTKRSGGNILQTGCUG
        |||||||||| |||||||||| <   5265bp   > ||||||||||||||||||||||
Target  KCGLTKDQLDGTIGIHPVCAE                VFTTLSVTKRSGGNILQTGCUG
        atgcaagccggaagaccgtgg                gtaactgaactggaaccagttg
        aggtcaaatagctgtactgca                ttcctctcagcggattacgggg
        atggcgcggtcccgccctcag                gcgtgggcgctgaccggctcat
                                                                 * 
 Sequence until next stop: 
TAA
 *