______________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-24
 Query name: gi|144953869|ref|NP_001039579.2| selenoprotein S [Bos taurus] >gi|172045703|sp|Q2KI76.2|SELS_BOVIN RecName: Full=Selenoprotein S; Short=SelS; AltName: Full=VCP-interacting membrane protein >gi|296475585|tpg|DAA17700.1| TPA: selenoprotein S [Bos taurus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/619877479/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000001.1:subseq_117905539,100146_ Strand: +
 Positions:
 -Exon 1  49340        49415
 -Exon 2  50013        50147
 -Exon 3  51737        51843
 -Exon 4  55180        55269
 -Exon 5  55370        55448
 -Exon 6  57240        57322

 Redox box: no

Query   MERDGDQLSARPTLETEGLRFLHVTV <---Intron---> GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRHLDQAAAALE <---Intron--
        |||||||||||| ||||||||||||| <   597bp    > ||||||||||||||||||||||||||||||||||||||||||||| <   1589bp  
Target  MERDGDQLSARPALETEGLRFLHVTV                GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRHLDQAAAALE             
        agcgggcctgccgcgaggcctccgag                gtccgatgttagtatacctggtcactactagtacactgcggggcg             
        tagagaatccgcctacagtgttatc                tgcttccaggatttggtttatttaatccgtgctgagataacccct              
        gggcgtggcggccggcgggtctcca                gccggctccgccccccctccggtggtccgggcggggcatatcttg              
                                                                                                            

Query   -> PDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ <---Intron---> LEEEKRRQKIEMWDSMQEGKSYKGNTRKPQ <---Intron---> 
         > ||||||||||||||||||||||||||||||||||| <   3336bp   > |||||||||||||||||||||||||||||| <   100bp    > 
Target     PDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ                LEEEKRRQKIEMWDSMQEGKSYKGNTRKPQ                
           cgaggaccggtgggctaacggtagcggacagatac                cgggaaacaagatgaacggaatagaaaacc                
          acatttagaactcccgtataaatacataaaaaatga                taaaaggaatatgagtaagagaagacgaca                
          atttttaaggtaatttgagagaataataatagaaag                taaaagaggtaggtcgaaaattaataagtg                
                                                                                                            

Query   EEDSPGPSTSSVIPKRKSDRKPLRGGG <---Intron---> YNPLSGEGGGTCSWRPGRRGPSSGGUG
        ||||||||||||||||||||||||||| <   1791bp   > |||||||||||||||||||||||||||
Target  EEDSPGPSTSSVIPKRKSDRKPLRGGG                YNPLSGEGGGTCSWRPGRRGPSSGGUG
        gggacgctattgacacatgaactcggg                tacttgggggatttacgcagcttggtg
        aaagcgcccccttcagacagactggg                gaactcgagggcgcggcggggcccgggg
        aacttgtttaaccgaaatcagtgaaa                tcttgttattacccgatataacattaac
                                                                            * 
 Sequence until next stop: 
TAA
 *