_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-51 Query name: gi|319803072|ref|NP_001156665.1| selenoprotein O [Bos taurus] Query range: 65-680 (total 680) Target: /data/www-rg/seblastian_results/980144687/tempfiles/temptarget.fasta Chromosome: JAHTZZ010000019.1:subseq_440180,99716_ Strand: - Positions: -Exon 1 68544 68669 -Exon 2 63004 63254 -Exon 3 52502 52705 -Exon 4 51580 51760 -Exon 5 50323 50453 -Exon 6 49718 49998 -Exon 7 45533 45683 -Exon 8 44747 44932 -Exon 9 44513 44669 -Exon 10 44228 44401 Redox box: YES Query PGPEGAPSAPRPVPGACFSRARPEPLRRPRVVALSEPALALL <---Intron---> GLGAPPAAAAAREAREAEAALFFSGNALLPGAEPAAHCYCGH || | | /| | / | | | /|/ || || < 5289bp > || ||||||||||||||||||||||||||||||||||||||| Target PGWELGPPPSQPSPPSLPSVPPPSAAGRVSRLAVKAAALGLL GLDAPPAAAAAREAREAEAALFFSGNALLPGAEPAAHCYCGH cgtgcgcccaccacctccagccctgggagtccggagggcgcc gcggccgggggcggcgggggcttagagcccgggcggctttgc cggatgcccgacgccctcgtccccccggtcgtctaccctgtt gtaccccccccgacgacacctttggacttcgcacccagagga gcgggagcccgccgcccctggggccgcagccgcgacccgccg cgcggcccccccggcgcgcgccccccggggccgccgcccccc Query QFGQFAGQLGDGAAMYLGEVCTEAGERWELQLKGAGPTAFSR <---Intron---> QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGSCVSSQSTVV |||||||||||||||||||||||||||||||||||||| ||| < 10298bp > |||||||||||||||||||||||||/|||||||||||||||| Target QFGQFAGQLGDGAAMYLGEVCTEAGERWELQLKGAGPTPFSR QADGRKVLRSSIREFLCSEAMFHLGIPTTRAGSCVSSQSTVV ctgctggccgggggatcgggtaggggctgcccagggcactta cgggcagcctaacgtctaggatccgacaacggttgttctagg atgatcgatgagcctatgatgcacgaggatatagcgccctcg acaggattgcgtgattggacttatgtcccgcgcgtccacctt gccgccgggcccccgcgcggccgccgcggggcgcggcgccc aggcccgggcccccgcgccgcgccgccccggtccccgcgctcg Query RDAFYDGNPRPEPCAVVLRLAPTFLR <---Intron---> FGSFEIFKPRDEHTGRAGPSVGRDDIRLQMLDYVISTFYPEIQACHPGDHVQRHAAFF |||||||||||||||||||||||||| < 741bp > |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Target RDAFYDGNPRPEPCAVVLRLAPTFLR FGSFEIFKSRDEHTGRAGPSVGRDDIRLQMLDYVISTFYPEIQASHPGDHVQRHAAFF cggttggacccgctgggcccgcatca tgttgatataggcagcggcaggaggacccacgtgaaattcgacgtccggcgcacggtt gactaagacgcacgctttgtcccttg tgctattacgaaacggcgcgtggaatgtattaattgctacataccacgaatagacctt ttccccgcggcggccgggcgccgcc gcaccgccgcacgcgtggcccgggtccagggtcccccccccgcgctccactggaccccc Query RE <---Intron---> VTRRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR <---Intron---> YDPDHVCNASDTAGRYSYSKQP || < 1126bp > | |||||||||||||||||||||||||||||||||||||||||| < 324bp > |||||||||||||||||||||| Target RE VVRRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR YDPDHVCNASDTAGRYSYSKQP cg ggccagccgggtctggttcggcaagaaaaggcaagtgctgtcga tgcgcgtagtgaggctttaacc ga ttggccgttcagagtgtgagttacaatgttgtctaagctgttag aacaatgaccaccggacagaac gg gggcgcgggtgggtgaccccgccaccgccggcccccgccccgc gccttcgcccccccgccaccggt Query EVCKWNLQKLAEALDPALPLELAEAILAEEFDAEFGRHYLQKMRRKLGLVQTEQEGDGALVAQLLETMHLTG <---Intron---> ADFTNSFYLLNS |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | < 4034bp > ||||||||||/| Target EVCKWNLQKLAEALDPALPLELAEAILAEEFDAEFGHHYLQKMRRKLGLVQTEQEGDGALVAQLLETMRLAG ADFTNSFYLLSS ggtataccacgggcgcgcccgcgggacgggtgggtgcctccaaccacgcgcagcgggggcggcccgaaccgg ggtaatttccat atgagataatcactacctctatcacttcaatacatgaaataatggatgttacaaagagcttcattactgtc gcatcactattgc ggcggcggggtgcgccggccggcgccggggcccgcccccggggcgggccgggggggcccggcgcggcgcgt gtccaccccggct Query FPTAPESPDLDGFLAALTAQCASLEELRLAFRPQMDPR <---Intron---> QLSMMLMLAQSNPQLLALIGTRASLARELERVEQQSRLEQLSEAEL | ||| |||| | ||||||||||||||||||||||| < 600bp > ||||||||||||||||||||||||||||||||||||/|||||| || Target CPAAPEPPDLDELLDALTAQCASLEELRLAFRPQMDPR QLSMMLMLAQSNPQLLALIGTRASLARELERVEQQSQLEQLSEDEL tcggcgccgcggccggcagctgtcggcacgtcccagcc cctaacacgctaccccgcagacgacgcgcgcggcctccgccagggc gccccaccataattactccagcctaatgtctgcatacg atctttttcacacattcttgcgcgtcgatagtaaacataatgaaat catgagcacgtgcgcggtagtccaggggcccacggtc gggcggcggagacggcggcccggacgtggggcggggggagggcgcgg Query HGKNRSRWAAWLHNYR <---Intron---> ARLEKDREASSDAVTWQAERTRVMRANNPKYVLRNYIAQGAIEAAESGDFSE <---Intron---> |||||||||||||/|| < 77bp > |||||||||| || |||||||||||||||||||||||||||||||||||||| < 111bp > Target HGKNRSRWAAWLHDYR ARLEKDREASGDAATWQAERTRVMRANNPKYVLRNYIAQGAIEAAESGDFSE cgaaaactggtccgta gccgagcggaggggatcggcacgacgaacatgcaatagcggaggggaggttg agaaggggccgtaaag cgtaaagacggacccgacagcgttgcaacaattgaatcagctaccaggatca ccgcgccgcggcccc gcggggcggccccaccggcgcatcgcccccgcgggttcagcctatggctccgg Query VRRVLKLLETPYGGEAEAEAAEPAEASEAAEETGGAAGRRRSYSSKPPLWAAELCVTUSS |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| Target VRRVLKLLETPYGG--EAEAAEPEEASEAAAETGGAAGRRRSYSSKPPLWAAELCVTUSS gccgcaccgactgg--ggggggcgggagggggagggggcccttaaaccctgggctgattt tggttattaccagg--acaccacaacgacccacggccggggcaggacctgccatgtcgcc gggggggggctccg--gggttgcggccgacggccgtccgccccccgctcggaggcggaca * Sequence until next stop: TAA *