_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-23
 Query name: gi|821102030|ref|XP_012375807.1| PREDICTED: selenoprotein M, partial [Dasypus novemcinctus]
 Query range: 13-125  (total 125)

 Target: /data/www-rg/seblastian_results/200455874/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000007.1:subseq_2542760,100113_ Strand: -
 Positions:
 -Exon 1  50860        50928
 -Exon 2  50635        50669
 -Exon 3  50196        50274
 -Exon 4  49952        50107

 Redox box: YES

Query   APDLLHFVPLQTCGGUQLNRLKE <---Intron---> VKAFVTQDIPFY <---Intron---> HNLVMKHLPGADPELVLLDHRYEELE <---In
        |||| |||||||||||||||||| <   190bp    > |||||||||| | <   360bp    > |||||||||||||||||| ||/|||| <    8
Target  APDLSHFVPLQTCGGUQLNRLKE                VKAFVTQDIPLY                HNLVMKHLPGADPELVLLGHRFEELE       
        gcgctctgcccatggtccaccag                gagtgacgacct                cacgaacccgggcgcgtcgcctggcg       
        ccatcattctacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgagtaata       
        ttcacttcccgataaagttcggg                ggccccgccac                cccgggatggaccagcgggccctgagg       
                       *                                                                                    

Query   tron---> RIPLSDMTREEINALVQELGFYRKAAPDAPVPPEYLRAPARPAEGDPDRADL
        8bp    > |||||||||||||||||||||||||/|| ||||||| |||||| | || |||
Target           RIPLSDMTREEINALVQELGFYRKASPDEPVPPEYLPAPARPAGGAPDHADL
                 caccagaacggaagcgcgcgttcagtcggcgccgtccgcgacggggcgcggc
                 gtctgatcgaatacttaatgtagacccaactccaatccccgccggccaacat
                 atacccgccggccgggggcccccgggccgtgcggctggctgctacttccacg
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 39 ; UGA-SECIS: 330

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAHTZZ010000007.1:subseq_2542760,100113_ Strand = - Positions = 49912 - 49840
 Found by:  Infernal (score=15.78) Covels (score=24.42)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -22.69

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[{(({((((((((................))))))))}))}]]}..--..-.)))))))..
 target  UCUGGGGAC---AGAAUGAAGCGCUCAGCGGCCCGGGAGCACCUCCCUCGUUGAGGGCCGACAC--CC-CGUCCCCGAG
                         ****           ^^                         ****