_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-26
 Query name: gi|965795156|ref|XP_011968829.2| PREDICTED: glutathione peroxidase 3 [Ovis aries musimon] >gi|965939247|ref|XP_014951639.1| PREDICTED: glutathione peroxidase 3 [Ovis aries]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/948349445/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000327.1:subseq_10054327,101272_ Strand: +
 Positions:
 -Exon 1  44058        44144
 -Exon 2  48640        48793
 -Exon 3  50004        50121
 -Exon 4  50558        50657
 -Exon 5  51081        51299

 Redox box: no

Query   MARLLRASCLLSLLLAGFIPPSQGQEKSK <---Intron---> MDCHAGVGGTIYEYGALTIDGEEYIPFKRYAGKYILFVNVASYUGLTGQYVE <-
        ||||||||||||||||||||||||||||| <   4495bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MARLLRASCLLSLLLAGFIPPSQGQEKSK                MDCHAGVGGTIYEYGALTIDGEEYIPFKRYAGKYILFVNVASYUGLTGQYVE   
        agccccgttcctcccggtaccacgcgata                agtcgggggaatgtggcaaggggtactactggatactgaggattgcagctgg   
        tcgttgccgttctttcgttccgagaaaca                tagacgtggctaaagctctagaaatctagacgaattttatcgaggtcgaat    
        gcgccgacctccgcgccctcgcgaggggg                gcccttgcccctgcgcccctgggccctggttcaccccccgcccacggcgtt    
                                                                                                *           

Query   --Intron---> LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK <---Intron---> YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFL
          1210bp   > ||||||||||||||||||||||||||||||||||||||| <   436bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK                YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtctactgacgcggatgacgaca                tgccgggtacatcctgagggaggagcattatc
                    atactaaatactgttttgtcgaatgaaacgaacattccta                atgcgggtccatattaagatagaaaaatactt
                    agtaagagtaattgctgcccccataaaaaagcggcaccc                gttagtgccccccggtgattgcggggggccacg
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVLEAKGK
        | <   423bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVLEAKGK
        a                attccatgccgtcgccttgcaagcgaatatgatcggcggacaacttccaagatgaagacatacccggcggaga
        a                acgccccattgccggttgactataatggataatttgcagtcttggaagcctactatattcatgggcttacaga
        g                cctttcggcacatcctcgacggctccggctggcgggatccccgcgccccgcctcggccgccggggacggcggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 610 ; UGA-SECIS: 1069

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAHTZZ010000327.1:subseq_10054327,101272_ Strand = + Positions = 51910 - 51983
 Found by:  Infernal (score=17.73) Covels (score=25.09)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.14

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((([((---....([[((({(((({(((.....--........)))}))))})))]])......-...))])))...
 target  GGCGGCAUC---GCUAUGAAGGAGGGGCCCGAAGCC--CACAUGGGCGGACCUCCCUUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****