_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-27
 Query name: gi|926722089|ref|XP_005696754.2| PREDICTED: glutathione peroxidase 6 [Capra hircus] >gi|965991328|ref|XP_004019101.2| PREDICTED: glutathione peroxidase 6 [Ovis aries]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/203285549/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000014.1:subseq_133020641,100218_ Strand: +
 Positions:
 -Exon 1  76873        76959
 -Exon 2  79281        79434
 -Exon 3  81262        81379
 -Exon 4  82532        82631
 -Exon 5  83411        83614

 Redox box: no

Query   MILQLWASCLFPLFLVSLAQLTPKQQQMK <---Intron---> VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE <-
        |||||||||||||||| |||||||||||| <   2321bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MILQLWASCLFPLFLVGLAQLTPKQQQMK                VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE   
        aaccctgttctcctcggtgccacacccaa                ggttaggagaatgtggcacagggtactactggacgctgaggattgtagctcg   
        tttatgccgttcttttgtcatccaaaata                tagaagtcgctaaagctctagaaatataaacgaattttatccaggtccaac    
        gcggcgccttcagcgccatggtgggaagg                gtccgggaccctgtaccccttggtcgcggtacgtcgtctacctacgatgta    
                                                                                                *           

Query   --Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          1827bp   > ||||||||||||||||||||||||||||||||||||||| <   1152bp   > ||||||||||||||||||||||||||||||||
Target               LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcactggggtgtctactgacgcgaatgacagca                tgccgggtgcatcctgagggaggagcagtatc
                    atactaaatactgttttgtcgaatgaaaccaacatttgta                atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtctatggctcccataaagaagcagctggc                gtatatccttcttgctgagtgtaaaaggctccg
                                                                                                            

Query   K <---Intron---> NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQFKSE
        | <   779bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQFKSE
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgtgaagatgacgtcactaag
        a                acgccccattgccgattgactataatggataatttgcagtcttggaagcctgctacattaataataga
        g                ccctattttgcaatgccggcggctctcgctggtaggttcctcgtgccgtaccataacgggtgggcaca
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 485 ; UGA-SECIS: 929

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAHTZZ010000014.1:subseq_133020641,100218_ Strand = + Positions = 84100 - 84175
 Found by:  Infernal (score=30.04) Covels (score=24.1)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -27.36

         ..(((((((.......(((((((((((((((...............))))))))).))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[(((((((((((......--.........)))))))).)))]])......-..)))))))}))
 target  GAGGGGCAUC--UCCAUGAUGGUGGGUCCUAAAGCC--CCUGUGGGCAGGACCCAACCAGAACCUUCC-UUGGUGCCUGUC
                         ****          ^^^                         ****