_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-59
 Query name: gi|550822380|ref|NP_001272641.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor [Capra hircus] >gi|262064802|gb|ACT53163.2| phospholipid hydroperoxide glutathione peroxidase 4 [Capra hircus] >gi|263043513|gb|ACY69862.1| phospholipid hydroperoxide glutathione peroxidase 4 [Capra hircus]
 Query range: 7-200  (total 200)

 Target: /data/www-rg/seblastian_results/175429074/tempfiles/temptarget.fasta
 Chromosome: JAHTZZ010000006.1:subseq_67211687,100431_ Strand: -
 Positions:
 -Exon 1  51573        51647
 -Exon 2  50507        50601
 -Exon 3  50285        50429
 -Exon 4  49998        50149
 -Exon 5  49864        49888
 -Exon 6  49665        49724
 -Exon 7  49563        49592

 Redox box: no

Query   SRLYRLLKPALLCGALAAPGLASTM <---Intron---> CASRDDWRCARSMHEFSAKDIDGRMVNLDKYR <---Intron---> GHVCIVTNVAS
        ||||||||||| ||||| ||||||| <   971bp    > |||||||||||||||||||||||||||||||| <    77bp    > |||||||||||
Target  SRLYRLLKPALFCGALAVPGLASTM                CASRDDWRCARSMHEFSAKDIDGRMVNLDKYR                GHVCIVTNVAS
        acctcccacgcttggcggcgcgaaa                tgtcggtctgctacgttgagaggcagacgatc                gcgtagaaggt
        ggtagttaccttggctctcgtcgct                gccgaagggcgctaatccaataggttataaag                gatgttcatcc
        ctgccgcgagaccgtgtggcgcccg                cgccccgcttccgcacacgcccgcgtcgcgc                gccgcccctgcg
                                                                                                            

Query   QUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ <---Intron---> EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRG
        ||||||||||||||||||||||||||||||||||||| <   135bp    > |||||||||||||||||||||||||||||||||||||||||||||||
Target  QUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ                EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRG
        ctgaaggataccggccgctggtgtcacgtctactgac                gcgaaggaagtgggtagatgttaaatgaggggccctataagccagag
        aggacataacattatacgacaggtgttctcgaatgga                acggacataatccgaatatattgatgtagaacactgagtatacaggg
        aacgtcacctgcccgccaccgttagcgcctccgtggg                gagttcgcagcctctccactgccgctatgcccctggaggacgcgggc
         *                                                                                                  

Query   MLGN <---Intron---> AIKWNFTK <---Intron---> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLPCYL
        |||| <   109bp    > |||||||| <   139bp    > |||||||||||||||||||| <    72bp    > ||||||||||
Target  MLGN                AIKWNFTK                FLIDKNGCVVKRYGPMEEPL                VIEKDLPCYL
        acga                gaatataa                tcagaagtggactgcaggcc                gagagccttc
        ttga                ctagatca                tttaaaggttagagctaact                ttaaatcgat
        gga                cccagcccg                cctcgcctggggttcgagcg                gaggcggccc
                                                                                                  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 54 ; UGA-SECIS: 426

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAHTZZ010000006.1:subseq_67211687,100431_ Strand = - Positions = 49508 - 49436
 Found by:  Infernal (score=31.35) Covels (score=36.91)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -14.74

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({({((((......([[{((((((((({(.....-.........)})))))))))}]])----...))))})})..
 target  CUUCCCCCGGUGCCUAUGAUGGUCUGUCUGAAAACC-AGCCCCUGGUGGGGCAGACCUGAG----AAUCUGGCGUGCA
                         ****           ^^^                       ****