------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAGGNJ010000002.1:subseq_10210791,150000_ Strand = - Positions = 49576 - 49500 Found by: Infernal (score=30.6) Covels (score=26.25) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -12.39 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(([{{{((......{[[{((((({(((((................)))))})))))}]]}..--...))}}}])).. target CACUGCGGUGCUUUCUUGACGUUGUUGCUCAAAAUCUUCUUGUGAGGUGAGCUACGACUGAUGC--UGCCAGGCAAGGC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAGGNJ010000002.1:subseq_10210791,150000_ Strand = + Positions = 5428 - 5500 Found by: Infernal (score=11.25) Covels (score=3.02) Stem2 length = 8 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -5.23 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...({((((---....([[(({[{((((((.................))))))}]}))]])..--....))))})... target CUUUCAUUG---CCAGUGAAGAGCUUCAGGAUAAUUCUACUCUGAGGCCUGGACACUUGAGGU--UGAUCAAUAACUC **** ^^ ****