_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-22
 Query name: gi|1019056258|ref|XP_001514290.3| PREDICTED: selenoprotein T [Ornithorhynchus anatinus]
 Query range: 1-157  (total 157)

 Target: /data/www-rg/seblastian_results/322882820/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49979        50112
 -Exon 2  51207        51333
 -Exon 3  52588        52675
 -Exon 4  53376        53497

 Redox box: no

Query   MEIFEMVFVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR <---Intron---> HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQ
        / /  /  ||||||||||||||||||||||||||||||||||||| <   1094bp   > |||||||||||||||||||||||||||||||||||||||
Target  VTVLSVFSVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR                HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQ
        gagctgtagttgtacgtggtacgaacctcgacagggatccccata                cagttctgtacgtagtaaggagctgttgacgcaatctgc
        tcttcttgtcggaggttaaatgttgagacatgtagaaatcactag                atccttcttattttgttttgaactcttgtaccgtgagga
        gaggtgctccaccgggtggcgggccggcaccgcaggccttatct                gcaactgtccaaaatcacctcgcattctcgataccgggcg
                  *                                                                                         

Query   ENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEITLND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI
        ||| <   1254bp   > |||||||||||||||||||||||||||||| <   700bp    > ||||||||||||||||||||||||||||||||/|/
Target  ENK                VYACMMVFFLSNMIENQCMSTGAFEITLND                VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESM
        gaa                gtgtaagttcaaaagactataggtgaatag                gcgttacgtgccctacccgcacgagaacagcagta
        aaa                tacgttttttgattaaagtccgctatcta                atctgcatacgatcctaattattaaatatatatact
        acg                gcccggcccgccgtacgtgctgttactgt                tcaggtgggtccctcgggtagcttcgggctgcggag
                                                                                                            

Query   PHHRS
        |||||
Target  PHHRS
        cccct
        caagc
        cttaa
             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 690 ; UGA-SECIS: 1128

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 54188 - 54270
 Found by:  Infernal (score=33.05) Covels (score=40.34)
 Stem2 length = 12   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -29.4

         ..(((((((.........(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         ..(((((((.........{[[[((((((((((((....-........))))))))))))]]]}.........-...)))))))..
 target  CCACGUGGCGCAGACCCAUGAAGGCCUGCACUGAAGAC-AGCUGCUGUUGGUGCAGGCUGGAUGCCUCUCUU-GCAGCCACGUUG
                           ****                                     ****