------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 54188 - 54270
 Found by:  Infernal (score=33.05) Covels (score=40.34)
 Stem2 length = 12   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -29.4

         ..(((((((.........(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         ..(((((((.........{[[[((((((((((((....-........))))))))))))]]]}.........-...)))))))..
 target  CCACGUGGCGCAGACCCAUGAAGGCCUGCACUGAAGAC-AGCUGCUGUUGGUGCAGGCUGGAUGCCUCUCUU-GCAGCCACGUUG
                           ****                                     ****                      

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 144930 - 145014
 Found by:  Infernal (score=13.36) Covels (score=8.5)
 Stem2 length = 9   Apical loop length = 24   Insertion in stem2 = 0, 2
 Free Energy = -6.98

         ..(((((((.......(((((((((((((((......................)))))))).).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccag-g-cCuGAUGuuuuuucaugaccggc
         .((({((((.......([[[(((((({(((........................)))}))).).))]]])..--....))))}))).
 target  AUAAACCAGAGUUGCAUGAAGACAGCUGAACAAACUGAAUUUUGAGACAUAACUUUCUGCUGGAUUGGAGCC--UUUGCUGGAUUAG
                         ****           ^^^                                ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 22785 - 22851
 Found by:  Infernal (score=10.42) Covels (score=3.82)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -17.7

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((([((.......{[[{((([(((({(------(......-----..))}))))])))}]]}----....))]))))..
 target  GAGGGGAAGGAAUAAAUGACCACAGGGCUG------GAGCUCU-----GGCCUGCUCGGUGUGAC----AGCACUGCCCUGG
                         ****                                         ****