------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 52818 - 52906
 Found by:  Infernal (score=22.29) Covels (score=37.04)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -12.02

         ..(((((((..............(((((((((((((((.................)))))))))))))))...........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (((((((................{[[{(({{(((((((.................)))))))}}))}]]}.......-.....)))))))
 target  UCUCUGUGACAAGCCAGCUUGAAUGAUGUUUUCCUUAUAAAUGGUAAAAAAACCAGUGAGGAUUACUGAUGCUAGAC-AGCAGACAGGGG
                                ****           ^^^                         ****                    

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 76051 - 75956
 Found by:  Infernal (score=12.17) Covels (score=10.53)
 Stem2 length = 7   Apical loop length = 29   Insertion in stem2 = 0, 0
 Free Energy = -7.38

         ..(((((((..................(((((((((((.............................)))))))))))..........)))))))..
 model   uucggucaugcg-----------UuaAUGAcGgccuggcccgAAAcCcuuuuugggguggg------ccaggcCuGAUGuu-u-uuucaugaccggc
         ..({(((((..................{[[((((((((.............................))))))))]]}......-...)))))})..
 target  CUUAGAGUUCUUUGUCCUGUCAUGCUAUGAAGGAUUAGCCUUUCCUAACUUGUCCUCAAGAUAACAACUAAUCCUGAUGUCUCC-CCCAACUCAACA
                                    ****       ^^                                  ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 12729 - 12639
 Found by:  Infernal (score=11.75) Covels (score=9.53)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -7.9

         ..(((((((......................(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg---------------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((......................{[[{({(((((([(..................)]))))))})}]]}..--..-.)))))))))
 target  CCUUCAGCGUGGAGGUGAAGCUCAAGUUUAGUGAAGAAAGGGUGUAAAAGUAAUUUAUAGACCAAAUCUUUACAGAUGU--UC-CUGCUGGGGG
                                        ****          ^^^                         ****