------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAGGNJ010002445.1:subseq_1,150000_ Strand = - Positions = 17279 - 17207 Found by: Infernal (score=19.65) Covels (score=22.75) Stem2 length = 7 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -22.15 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((((((((--....{[[[{(((((((........-............)))))))}]]]}..--...))))))))). target CUGGGAUCAU--GCUAUGAAGUGCCCUAUAUAAACC-CUUCCAGGGUGCUGGGGCAGGGAUGU--UUGAUGGUCCCAC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAGGNJ010002445.1:subseq_1,150000_ Strand = - Positions = 33483 - 33389 Found by: Infernal (score=15.69) Covels (score=5.27) Stem2 length = 10 Apical loop length = 27 Insertion in stem2 = 0, 0 Free Energy = -15.98 ..(((((((...........((((((((((((((.............................))))))))))))))..........))))))).. model uucggucaugcg----UuaAUGAcGgccuggcccgAAAcCcuuuuuggggu------------gggccaggcCuGAUGuu-u-uuucaugaccggc (({({([((...........([[{((((({(((((...........................)))))})))))}]])......-...))])})})) target GGGAAUAUCCCUCAGGAGAAUGAUGGGACUGUCCCUCAGGGAUAGUCCCUCAGGAGAGCCAUGGGACUGUCCCUGAGGAAAAU-GAUGGGACUGUC **** ****