------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49660 - 49590
 Found by:  Infernal (score=23.11) Covels (score=18.85)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -20.5

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ....((((((--....{[[{((((({((((.........-----...))))})))))}]]}......-.-))))))....
 target  UGCAUGGGAU--AGGAUGAAACCCUCAGCAGAAAGCGCC-----AGGUGCUAAGGGUAGAUGUGCUG-A-GUCCCAAAGG
                         ****           ^^^                       ****                   

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 105062 - 104996
 Found by:  Infernal (score=14.32) Covels (score=7.03)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -14.7

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..({(((((.--....([[{{(((({{((((......--.-----...))))}}))))}}]])..--.--.)))))})..
 target  UCCAUACCUA--GCCAUGAUACUUCCAGCCUCCAAAG--A-----GGAGGGCAAGAAGCUGAAGA--A--AAGGUGAGAU
                         ****             ^^^                       ****                 

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 88377 - 88440
 Found by:  Infernal (score=11.18) Covels (score=0.72)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 2
 Free Energy = -8.7

         ..(((((((.......(((((((((((((((.................)))))))..))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggcca--ggcCuGAUGuuuuuucaugaccggc
         .({((({((---((..([[{(((((({((.------.....-----....))}))..))))}]])..--)--)))})))}).
 target  CUCCUUCAC---ACCAUGACACUUUUUGCA------CACCU-----GGAGGCCAAGGAAGUUGAGGU--G--UGUCAAGAGA
                         ****                  ^^                     ****                 

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 105332 - 105403
 Found by:  Infernal (score=10.9) Covels (score=0.06)
 Stem2 length = 7   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -9.38

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.......([[({((({((((.------............))))})))})]]).....-...))))))...
 target  GCUUUGGACCCUAAAAUGAUAUUUUCUUCU------CUUAUAGAGCCUGGAGUAAGCAGAAGAUAG-GGAGUCCAGCAC
                         ****                                     ****