_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-14
 Query name: gi|902910357|ref|XP_013043927.1| PREDICTED: selenoprotein K isoform X2 [Anser cygnoides domesticus]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/260012841/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49985        50094
 -Exon 2  50805        50885
 -Exon 3  51483        51576

 Redox box: no

Query   MFSVTTGQVLDNQSRAPWSLSSITDFFWSIADFVVLF <---Intron---> FQSIIQPDLRRRGYT-SSYLGRSDGRG <---Intron---> PPGN
        /|   ||||||||||||| |||||||||||||||||| <   710bp    > ||||||||||||||| ||| |  |||| <   597bp    > || |
Target  VFGYVTGQVLDNQSRAPWRLSSITDFFWSIADFVVLF                FQSIIQPDLRRRGYTSSSYSGYHDGRG                PPAN
        gtgtgagcgtgacacgctatttaagttttaggtggct                tcaaaccgtaaagtatttttgtcggag                ccga
        ttgatcgattaaaggccggtcctcattgctcattttt                tagttacatggggaccccacgaaaggg                ccca
        atattaaatgtcgtgtcgggataatccgaaattgtg                tcgcttaataaaaccatcctaacttaa                gtaat
                                                                                                            

Query   PRRRMGRINHWGGGPNPPPMAGGGUGR
        |||||||||||||||/|||||||||||
Target  PRRRMGRINHWGGGPSPPPMAGGGUGR
        ccccagcaactgggcacccaggggtga
        cgggtggtaaggggcgccctcgggggg
        tctggcaatcgtacctacagtataaag
                                *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1216 ; UGA-SECIS: 1222

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 52793 - 52880
 Found by:  Infernal (score=23.84) Covels (score=32.4)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -6.43

         ..(((((((.............(((((((((((((((.................)))))))))))))))...........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .({([((((.............([[((((((((((((.................))))))))))))]]).......-...))))])}).
 target  UUCUGUGAUAGGAGCAGAUCAAUGAAGUUGUACUGGGAACUCCUUCCUCAAGGAUCCGGUGUAACUGAACCACAGU-UUCAUUAAAUAC
                               ****           ^^                          ****