------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 11133 - 11058 Found by: Infernal (score=29.97) Covels (score=22.33) Stem2 length = 10 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -22.33 ..(((((((.......(((((((((((((((.................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..(((((((---((..([[[({(((((((((.................)))))))))})]]]).....-)-)))))))).. target ACCUGUGCU---UGAAUGAAGAGUGUAGCUUAAACCCAGGCUCUGGAAAGGCUGCAUCCGGAAGAGAA-C-AAGCACGGCC **** ^^^ ****