_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-53
 Query name: gi|929486160|ref|XP_014113405.1| PREDICTED: selenoprotein H isoform X1 [Pseudopodoces humilis]
 Query range: 1-151  (total 151)

 Target: /data/www-rg/seblastian_results/718845748/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50389        50597
 -Exon 2  50167        50312
 -Exon 3  49997        50094

 Redox box: YES

Query   MPEAPFLLRRRPHRLGSPRMAPRGRKRGAQQPPAAEAPETAEAPQKRPRAQAKDEGSPGDIGPRVVIEHC <---Intron---> KSURVFGRNAAAVS
        /| |||||| | |||||||||||||||||||| |||||||| ||||| ||| |||| ||||||||||||| <    76bp    > ||||||||||||||
Target  IPGAPFLLRCRLHRLGSPRMAPRGRKRGAQQPAAAEAPETAGAPQKRARAQTKDEGGPGDIGPRVVIEHC                KSURVFGRNAAAVS
        acggctccctaccccgtcaagccgaacggcccgggggcgagggccacgcgcaaggggcggagccggagct                aatcgtgcagggga
        tcgcctttgggtagtgccgtccgggaggcaaccccaccaccgccaagcgcacaaaggcgatgcgtttaag                agggttggaccctg
        ttacccgcgtgccccctcggtccgggcacgggggcgaggagacggggggcgcatgcccgcccctgccgc                cgcacgcgccggggc
                                                                                                *           

Query   AALRGAMAQLPVDINPRPPRRNSFEVSLVKEDGST <---Intron---> VELWSGIGKGPPRKLKFPQPETVVEALKSSLA
        |||||||| |||||||||||||||||||||||||| <    72bp    > ||||||||||||||||||||||||||||||||
Target  AALRGAMAHLPVDINPRPPRRNSFEVSLVKEDGST                VELWSGIGKGPPRKLKFPQPETVVEALKSSLA
        ggccggagcccggaacccccaaatggtcgagggaa                ggctagagagcccacatcccgaggggcaaatg
        cctggctcatctatacgccggagtatcttaaagg                ctatgggtgagccgatatcacacttactaggtc
        gcgcgcgccccgcccggggcgcccggtggggccc                cggggctcgggcccgggtcgagcggacggctga
                                                                                           
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 110 ; UGA-SECIS: 344

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 49886 - 49795
 Found by:  Infernal (score=15.49) Covels (score=12.01)
 Stem2 length = 8   Apical loop length = 26   Insertion in stem2 = 0, 0
 Free Energy = -18.52

         ..(((((((..........(((((((((((((((........................)))))))))))))))...........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuugggg---------cgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(((((((..........{[[(({(((({(((..........................)))}))))}))]]}.......-...)))))))..
 target  CAGGUGGCAUGAGCAUCCAUGAAGAGGCGAGACCAAGUGGGGGGCACCCGCCAGCCCCAGUCCCGUCCCUGAUGCUGCAG-CUCUGCCACUGC
                            ****           ^^                                 ****