_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-21
 Query name: gi|874499865|ref|XP_012963760.1| PREDICTED: 15 kDa selenoprotein, partial [Anas platyrhynchos]
 Query range: 1-141  (total 141)

 Target: /data/www-rg/seblastian_results/382598496/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49988        50167
 -Exon 2  60901        60964
 -Exon 3  68588        68637
 -Exon 4  70306        70434

 Redox box: no

Query   IDLQVYVYGAQLSSEACRELGFSSNLLCSSCNLLGQFNLNQLDPFCRQCCQEEAQLETRK <---Intron---> LYAGAVLEVCGUKLGRFPQVQA <
        || || |||||||||||||||||||||||||||||||||||||||||/|||||||||||| <  10733bp   > |||||||||||||||||||||| <
Target  IDFQVSVYGAQLSSEACRELGFSSNLLCSSCNLLGQFNLNQLDPFCRECCQEEAQLETRK                LYAGAVLEVCGUKLGRFPQVQA  
        agtcgagtggctttggtagcgttaatctattaccgctacaccgcttagttcgggccgaaa                ctggggcggtgtatgatccgcg  
        tatatgtagcatccacggatgtcgattggcgattgatataatactggaggaaacatacga                tacgcttatgggatggtcata   
        tctgatttaaggaaatcaggccctcggcttccttggctgtggtcccggccaaatggacag                ttaattaaataaagagctacg   
                                                                                               *            

Query   ---Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERL
           7623bp   > |||||||||||||||| <   1668bp   > |||||||||||||||||||||||||||||||||||||||||||
Target                FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERL
                      tgaagacactagccaa                tgcgtgcgcaccggagaagggcaacataagagggtcagatgcc
                     cttggaacattggtata                atggcacttattaaggatcaatgttagacagtaattgaatagt
                     tccgttgaaccgggacg                tgtttctaagggcctgctaaagcccggtattgaatataaaata
                                                                                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 543 ; UGA-SECIS: 750

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 70978 - 71047
 Found by:  Infernal (score=30.79) Covels (score=23.09)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -16.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((((((((--(...{[[{(((({(((({(.....---.......)}))))}))))}]]}..--.)-))))))))).
 target  UAAGUACACU--UUAGUGAAGACUACAUAGAAAACC---UCUGAGGUGUAUGAAGUCAGAUGU--CA-GGUGUGCUUU
                         ****           ^^^                       ****