------- SECIS element -- id:1 -- grade:B ----
 Chromosome = JAGGNJ010005555.1:subseq_3959384,150000_ Strand = - Positions = 44897 - 44815
 Found by:  Infernal (score=12.25) Covels (score=6.22)
 Stem2 length = 9   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -15.48

         ..(((((((........(((((((((((((((..................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuugggg---cgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(([({(((........{[[[(((((((((......................)))))))))]]]}......-...)))})])).
 target  AGCAGGCUGCUGUAUCAUGAAAGGCUUUUCGUCUUGACAGGAAACGACGUCAGGAGAGCCUGGAUUUUGGU-UUUCAGGUGGCA
                          ****                                        ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JAGGNJ010005555.1:subseq_3959384,150000_ Strand = - Positions = 135286 - 135207
 Found by:  Infernal (score=10.7) Covels (score=8.45)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 1, 0
 Free Energy = -8.35

         ..(((((((..................((((((((((.((.(((...............))))).))))))))))........)))))))..
 model   uucggucaugcg-----------UuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .((((((((..................{[[(((((((.--[((......-..-----...))--])))))))]]}..--....)))))))).
 target  CUGGGUUCAGGUCAUGUACAUUGCUGAUGAUGUCAUAG--AUGUCAACA-AA-----ACCCA--GUAUGGCAGAUAC--GACGUGAGCCUGA
                                    ****              ^^                        ****