_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-45
 Query name: gi|959060835|ref|XP_014733494.1| PREDICTED: redox-regulatory protein FAM213A isoform X2 [Sturnus vulgaris]
 Query range: 1-224  (total 224)

 Target: /data/www-rg/seblastian_results/721946929/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  53619        53796
 -Exon 2  53167        53258
 -Exon 3  51147        51287
 -Exon 4  50228        50392
 -Exon 5  50000        50095

 Redox box: YES

Query   MSFLPDLGAFTMGMWSVGLGAIGAAVTGIVLANTDLFLSKPEKATLEFLEEIELKSLGPE <---Intron---> QRTFKAGELWKENGAVIMAVRRPG
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||/|| | <   360bp    > /|||||||||||||||||||||||
Target  MSFLPDLGAFTMGMWSVGLGAIGAAVTGIVLANTDLFLSKPEKATLEFLEEIELKTLGSE                RRTFKAGELWKENGAVIMAVRRPG
        attccgtggtaagattggcggaggggagagcgaagttttacgagatgttggagcaatgtg                caatagggctagagggaaggcacg
        tcttcatgctctgtgctgtgctgcctcgtttcacatttcacaacctattaatatactgc                aggctacgatgaaagctttctggcg
        gccctcggcccgcggttctacttatgggccttctcgtgcgaagtaggtaggagcgtgaa                aagacaataggggttagcgtaaata
                                                                                                            

Query   UFLCRE <---Intron---> EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFKGEIFLDEK <---Intron---> KGFYGPRRRKMMLSG
        |||||| <   1879bp   > |||||||||||||||||||||||||||||||||||||||||||||/| <   754bp    > |||||||||||||||
Target  UFLCRE                EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFKGEIFLDQK                KGFYGPRRRKMMLSG
        ttttag                ggtgcttcaccctacggcctgggagaagaggggtccttaggatcgca                agttgccacaaattg
        gttgga                accatcctacatcatgtctacttaaatgcataataaatagatttaaa                agtagcgggatttcg
        atgcag                gtcgcctgacggcggtctctttgaggagtaggttgtccaaactgtag                actttacaaagggac
        *                                                                                                   

Query   FFRLGVWQNFFRAWRSGYSGNLEGEGFTLGGVYVIGAGRQ <---Intron---> GVLLEHREKEFGDKVSLPSVLEAAEKIKPQAS
        |||||||||||||||||||||||||||||||||||||||| <   132bp    > ||||||||||||||||||||||||||||||||
Target  FFRLGVWQNFFRAWRSGYSGNLEGEGFTLGGVYVIGAGRQ                GVLLEHREKEFGDKVSLPSVLEAAEKIKPQAS
        ttccggtcattcgtaagtagacggggtacgggtgagggac                ggtcgccgagtggagacctgcggggaaaccgt
        ttgtgtgaattgcggggaggatagagtctggtattgcgga                gtttaagaaatgaatgtccttaccaatacacc
        cccgatgatccttgatattatgaaaaccgatatgtgaaag                ttaggttgaatacacctatctattggaaaata
                                                                                                
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 213 ; UGA-SECIS: 630

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49786 - 49720
 Found by:  Infernal (score=33.16) Covels (score=23.84)
 Stem2 length = 10   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -35.3

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((((....{[[{((((((((((.......---------.))))))))))}]]}..--.))))))))))..
 target  UAUCUGACUGUAUUAAUGAAAGGCUGGGUCUAAAAUC---------UGACCUAGCCUAGAUGU--UUACAGUCAGAGA
                         ****           ^^^                       ****