------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 49786 - 49720 Found by: Infernal (score=33.16) Covels (score=23.84) Stem2 length = 10 Apical loop length = 8 Insertion in stem2 = 0, 0 Free Energy = -35.3 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((((((((....{[[{((((((((((.......---------.))))))))))}]]}..--.)))))))))).. target UAUCUGACUGUAUUAAUGAAAGGCUGGGUCUAAAAUC---------UGACCUAGCCUAGAUGU--UUACAGUCAGAGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 109740 - 109809 Found by: Infernal (score=12.31) Covels (score=12.99) Stem2 length = 12 Apical loop length = 8 Insertion in stem2 = 1, 0 Free Energy = -20.5 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(({({((.--....([[((((((.(((((((.......-----.)))))))))))))]])..--....))})})).. target CUGUCUUAGA--GAAAUGAAGGGCCUGCUUGGGAACCCAG-----CCCUGAGUGGCCCUGAACA--GGUGCUCACAUUG **** ^^ ****