------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 59338 - 59411
 Found by:  Infernal (score=15.7) Covels (score=14.55)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -5.14

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((({((.--....([[{{(((({(((((.....---.......)))))}))))}}]])......-...))})))...
 target  UCAGCGCAGC--UCUGUGAAAUUUUCAACCAAAAAU---CCCACUCUGGUUUAAAACAGAACCCAAA-UUCUUCUGCCCC
                         ****           ^^^                       ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 80008 - 80096
 Found by:  Infernal (score=11.93) Covels (score=10.13)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 1
 Free Energy = -22.4

         ..(((((((..................(((((((((((((((................))))))).))))))))........)))))))..
 model   uucggucaugcg-----------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         (((((({((((................([[((((((((((....................)))))).))))]])..--..))))}))))))
 target  UCCACACUGGGAAUGCUCCUUGGCCUAUGAUGGCUUGUCCACCAUGGCCAGGAAUUGCUGGGAUAGUGCCAGAGCU--GCCCCACUGUGGG
                                    ****          ^^                           ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 44482 - 44565
 Found by:  Infernal (score=11.25) Covels (score=3.75)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 1, 1
 Free Energy = -11.16

         ..(((((((..........((((((((((.(((((...............))))))).))))))))..........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         ..((((({((.........([[{((((((.((((.................)))))).))))}]])......-..))})))))..
 target  CUGGCCAUGGCAGGGGGUGGGAUGGGAUGAGUUUUAAGGUCCUUCCAACCCAAACCAUUCCCUGAUCCUGUA-CCUUCUGGCUUU
                            ****            ^^                         ****                   

------- SECIS element -- id:4 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 112472 - 112392
 Found by:  Infernal (score=10.7) Covels (score=15.51)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -9.25

         ..(((((((............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({((((((...........{[[(((((((((([(...............)]))))))))))]]}..--...))))))})..
 target  CUACGAGGUUAAUUAUUGCCUUGAUUAUAGAGCUGGAAUUGCCAUCUGUCAUAAGCUCUGUGGGAUGA--CCAAGCUUCUUUU
                              ****           ^^                        ****