------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 112621 - 112687
 Found by:  Infernal (score=11.26) Covels (score=9.64)
 Stem2 length = 11   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -17.3

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((.--....([{((({(((((((((.......-----.)))))))))})))}])----....))))})...
 target  UCUUAAGUGU--UUUGUGGAGGCCUGGGCUAAAUGGUUC-----CUUGGUCCAGCCCUGAA----CAGUCAUUCAUCU
                         ****                                     ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 109447 - 109364
 Found by:  Infernal (score=11.1)
 Stem2 length = 9   Apical loop length = 24   Insertion in stem2 = 0, 1
 Free Energy = -13.96

         ..(((((((.......(((((((((((((((......................))))))))).))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg-------cgggccagg-cCuGAUGuu-u-uuucaugaccggc
         (((({((((---((((([[((((({(((((........................)))))})).)))]]).....)-)))))))}))))
 target  UUGUUUCAG---UUUAUGAAAUCCAGGAUGAAGGUUGGAUUAGCACUCUGCUGCCAUCCAGGAAUUGAAAAGCCU-GAGCUGAUGUAA
                         ****          ^^                                 ****                   

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 44842 - 44922
 Found by:  Infernal (score=10.81) Covels (score=4.81)
 Stem2 length = 7   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.4

         ..(((((((........((((((((((.(((((...............))))).))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu--u-uuucaugaccggc
         .({((((((........{[[{(((((({{{(.......--..........)}}}))))))}]]}.......-...))))))}).
 target  GAUUCUGGAGUAACCAAUGAUAGCUCUAUUUUCAAAAU--AAACUUGACUACUCAGAGUUUGACUCUGGCC-UCAUCUAGACUA
                          ****            ^^^                        ****                    

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 28884 - 28962
 Found by:  Infernal (score=10.22) Covels (score=4.65)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -5.72

         ..(((((((........(((((((((((((((................)))))))).)))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccag-gcCuGAUGuu-u-uuucaugaccggc
         ..((((({(........([[{{({{-((((((................))))))--}})}}]])......-...)})))))..
 target  CAUCAGCAGCUUGCUAAUGAAAGUA-GAAAUUAAACGAAGAUCUGCCCGGUUUU--AUCCAGAGGCUUUA-AGUCAGCUGAGC
                          ****           ^^^                         ****