_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-74
 Query name: gi|1020954558|ref|XP_016156781.1| PREDICTED: glutathione peroxidase 1, partial [Ficedula albicollis]
 Query range: 1-169  (total 169)

 Target: /data/www-rg/seblastian_results/643435364/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50473        50631
 -Exon 2  50000        50347

 Redox box: no

Query   LGSLKGKVLLVANVASLUGTTTRDFLQLNELQQRYGPRGLQVLGFPCNQFGHQ <---Intron---> ENCTNEEILPMLEHVRPGNGYKPNFILFEKC
        ||||/|||||||||||||||||||||||||||||||||||||||||||||||| <   125bp    > |||||/||||||||||||||/||||//||||
Target  LGSLRGKVLLVANVASLUGTTTRDFLQLNELQQRYGPRGLQVLGFPCNQFGHQ                ENCTNDEILPMLEHVRPGNGFKPNFMMFEKC
        cgtccgagccggaggtctgaaacgtcccagcccctgccgccgcgtctactgcc                gataaggaccacgcgccgagtacataatgat
        tgctggattttcatcctggcccgattataataagagcggtattgtcgaatgaa                aagcaaattcttaatgcgagtacattttaag
        gcgggcgggggctgggcacgcgcccggccggggcccccgcgcccccccactcg                acccctgctcgcgctttccccggtcggcggc
                         *                                                                                  

Query   EVNGKNAHPLFTFLKEALPFPHDDPSSLMTNPQYIIWSPVCRNDIAWNFEKFLIGPDGVPFKRYSRSFETIKIQDDIELLLQKVA
        |||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EVNGKDAHPLFTFLKEALPFPHDDPSSLMTNPQYIIWSPVCRNDIAWNFEKFLIGPDGVPFKRYSRSFETIKIQDDIELLLQKVA
        ggagaggccctatcaggcctccggcttcaaacctaattcgtcagagtatgatcagcgggctactacatgaaaacggagtcccagg
        atagaacacttcttaactctcaaacccttcacaattgcctggaatcgataatttgcagtctagagggtactataaatatttaatc
        ggtggcgctccccgagggccgcccccgggccggcccgcgccctcccgccggcctccccgccacccgtcaccgcgtctggtgggtc
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 86 ; UGA-SECIS: 539

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 49913 - 49849
 Found by:  Infernal (score=27.62) Covels (score=14.37)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -11.8

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((([(((((---....{[[{((((((.((((......--------...))))))))))}]]}..--..-.)))))])))
 target  CAGAUUUUG---CUUGUGAUGGUGCAUCUUCCAAAUC--------CUUGAAGUGUACUUGAUGU--UU-UCAAAAGUUG
                         ****            ^^^                       ****