------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 49913 - 49849
 Found by:  Infernal (score=27.62) Covels (score=14.37)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -11.8

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((([(((((---....{[[{((((((.((((......--------...))))))))))}]]}..--..-.)))))])))
 target  CAGAUUUUG---CUUGUGAUGGUGCAUCUUCCAAAUC--------CUUGAAGUGUACUUGAUGU--UU-UCAAAAGUUG
                         ****            ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 10109 - 10027
 Found by:  Infernal (score=14.68) Covels (score=12.86)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -8.18

         ..(((((((...........(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((...........([[{(((((((({(....................)}))))))))}]])..--....)))))})..
 target  CAUCUUCUAAGGCCCACUGAUGAUCUGUCAAUUCUAAGGCUUCCCAUUCCGUCUGCAUUGGCAGUGAACA--GAAGUAGAGAAGG
                             ****           ^^                           ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 14554 - 14482
 Found by:  Infernal (score=10.82)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -6.53

         ..(((((((.......(((((((((((((((...................)))))))))))))))..............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu-----u-uuucaugaccggc
         ..({{((((---....([[{(((({({(((------.......-----...)))})}))))}]])..........-...))))}})..
 target  UGCCAUGAC---AGGAUGAUGAACUCCUGU------AGCUGAA-----GGGGCACGUGUUCUGAGGUUGGAGAUC-ACAGUCACAGAA
                         ****                                         ****