_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-38
 Query name: gi|823407957|ref|XP_004417764.2| PREDICTED: selenoprotein W [Odobenus rosmarus divergens]
 Query range: 2-93  (total 93)

 Target: /data/www-rg/seblastian_results/472593445/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010003396.1:subseq_938242,100233_ Strand: +
 Positions:
 -Exon 1  49979        50254

 Redox box: YES

Query   LRSPAMALAIRVVYCGAUGYKSKYLQLKKKLEDEFPGCLDICGEGTPQATGFFEVMVAGKLVHSKKRGDGYVDTESKFLKLVAAIKAALAQG
        | |||||| /||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||/|||||| |||||
Target  LWSPAMALTVRVVYCGAUGYKSKYLQLKKKLEDEFPGCLDICGEGTPQATGFFEVTVAGKLVHSKKRGDGYVDTESKFLRLVAAIKTALAQG
        cttcgagcagcggttggtgtatatcccaaatgggtcgtcgatgggaccgagttggagggatgctaaagggtggagaatcacgggaaagtgcg
        tgccctctctgttaggcggaacaatataaataaatcggtatggagccaccgttatctcgattacaaggagatacagattgttcctacctcag
        ggcacgccccatcttctaccgcgctgcgggagtgtcacgcctcggtcgcccctaggaggggtccggattccgcggcgtggggcccatcgtgc
                         *                                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 35 ; UGA-SECIS: 257

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010003396.1:subseq_938242,100233_ Strand = + Positions = 50290 - 50370
 Found by:  Infernal (score=25.96) Covels (score=31.23)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -8.53

         ..(((((((.........(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((({({(.........{[[{(((((({((((..................))))}))))))}]]}..--....)})})))..
 target  CCCAGCCCCUCGUGGUCAUGAUGGGAAGAACUGAAAUGUCUCGUGGGCGCCUGGUCUUUCCCUGAUGU--CCCCGCGACUGCC
                           ****           ^^^                          ****