_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-16
 Query name: gi|6649223|gb|AAF21431.1|AF166126_1 selenoprotein Zf1 [Homo sapiens]
 Query range: 1-277  (total 277)

 Target: /data/www-rg/seblastian_results/847184847/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010001568.1:subseq_278306,134242_ Strand: +
 Positions:
 -Exon 1  67465        67497
 -Exon 2  69813        69987
 -Exon 3  80466        80602
 -Exon 4  83744        83839
 -Exon 5  84120        84212
 -Exon 6  85752        85823
 -Exon 7  85997        86094
 -Exon 8  87727        87853

 Redox box: no

Query   MRSIPLRGFDQ <---Intron---> QMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG <---Intron---
        /|||||||||| <   2315bp   > ||||/| |/||| |||||||| |||||||||||||||||/ |/|||| ||||||||||| <  10478bp   
Target  IRSIPLRGFDQ                QMSSLVTEYMASQGTRFLRGCTPSRVRRLPDGQLQVTWENITSGKEDVGTFDTVLWAIG              
        aaaacccgtgc                catttgagtagtcgactcagtactagcaccggcccgatgaaatgaggggatgagctgag              
        tggtctggtaa                atccttcaatccagcgttgggcccgtggtcagatatcgaatccgaaatgctacttgct               
        aaccccgctcg                agtcgcgacgctaccgcgactccaagggcatcgcgtcggccctcggcgcccctcggca               
                                                                                                            

Query   > RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE <---Intron---> GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN <---
        > |/|/|/|||||||||/|/|//|||||///|||||||||||||| | <   3141bp   > |||||||||||||||| ||| | /||/||||| <   
Target    RIPETKSLNLEKAGVNTNPNSQKILVNAQEATSVPHIYAIGDVAE                GRPELTPTAIMAGRLLAQRLCGQASDVMDYDN     
          cacgaaacatgagggaaacaacaacgagcggatgccatgaggggg                gccgcacagaaggaccgccctgcgtggagtga     
         ggtcacagtataacgtacacagaatttacaaccctcatactgatca                ggcatccccttcggttcagtggaccattaaaa     
         tataacatgtgggtagccccctggcgcttggcctcccttccacaag                ggcggacgtagaagcgcgggctgcgcggttcc     
                                                                                                            

Query   Intron---> VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE <---Intron---> VYHAHYKPLEFTVAGRDASQCYVK <---Intron---> MV
        280bp    > ||||||||||||||||||||||||||/|||| <   1539bp   > ||||/||||||||| ||||||||| <   173bp    > ||
Target             VPTTVFTPLEYGCVGLSEEEAVARHGEEHVE                VYHAYYKPLEFTVAERDASQCYVK                MV
                   gcaagtaccgtgtggctggggggccgggcgg                gtcgttaccgtagggcggtcttga                ag
                   tcccttcctaaggtgtcaaactcgagaaata                taacaaactatctcagaccagata                tt
                   cccacccaggcctgggggggcgtccaggcgg                ttcgttaaggcagtagtgcgtcag                gg
                                                                                                            

Query   CLREPPQLVLGLHFLGPNAGEVTQGFALGIK <---Intron---> CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        |||/||||||||||||||||||||||||||| <   1632bp   > ||||||||||||||||||/||| ||||/||||||||||||||
Target  CLRKPPQLVLGLHFLGPNAGEVTQGFALGIK                CGASYAQVMRTVGIHPTCAEEVAKLRITKRSGLDPTVTGCUG
        tccaccccgcgcctcgcaggggacgtgcgaa                tggttgcgacaggaccatgggggaccaaactgcgcagagttg
        gtgaccatttgtattgcacgatcagtctgta                ggccacattgctgtaccgcaatcatgtcagcgtacctcgggg
        cgggcgggcgcgccctctgcactaattggc                gtacctaggggcgcccccttgggcggtccgcacgcctggccag
                                                                                               * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1330 ; UGA-SECIS: 1333

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010001568.1:subseq_278306,134242_ Strand = + Positions = 89184 - 89254
 Found by:  Infernal (score=30.53) Covels (score=30.72)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -22.76

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....([[{{((((({((((...............))))})))))}}]])----....)))))))).
 target  CGAUGCCAG---AAGAUGACAACGUGCGCAGAAACCCCCCUGUGGGCUGCCCACGUCCGAG----CCCCCUGGCGUUU
                         ****           ^^^                       ****