_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-14
 Query name: gi|1012197853|ref|XP_016011848.1| PREDICTED: selenoprotein K [Rousettus aegyptiacus]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/281354543/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010010833.1:subseq_1191368,100098_ Strand: +
 Positions:
 -Exon 1  46607        46625
 -Exon 2  50013        50103
 -Exon 3  51574        51657
 -Exon 4  52227        52314

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGNSSDSRYDDGRG <-
        ||||||| <   3387bp   > |||||||||||||||||||||||||||||| <   1470bp   > |||||||||||||||||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKRRGYGNSSDSRYDDGRG   
        agtatag                cgtgacactctatttaagtttgaggtggtt                taaccccggaaaagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg   
        gtccgc                aaggccgtgcagaatgaacccgaaagcgtg                ttatgtgatgagaactaccttcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLRGPNPPPMAGGUGR
          569bp    > ||||||||||||||||||/||||||||||
Target               PPGNPPRRMGRINHLRGPSPPPMAGGUGR
                     ccgaccaaagcaacccgcacccagggtga
                     ccgaccggtggtaatggcgccctcggggg
                    gaaactcaagtatttatcttttagttaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 389 ; UGA-SECIS: 395

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010010833.1:subseq_1191368,100098_ Strand = + Positions = 52704 - 52791
 Found by:  Infernal (score=22.35) Covels (score=37.35)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.23

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((.................))))))))))))]]}......-...))))})...
 target  UGCUCUGUGCCUUCACAGACGGAUGAGGUCGUGCUGGGAAUUCCCUCCCCAGGGAUCUGGCAUGACUGACAUGCAG-UUCUAUAAAUGC
                                ****           ^^                          ****