_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-30
 Query name: gi|168693631|ref|NP_001108221.1| methionine-R-sulfoxide reductase B1 [Canis lupus familiaris]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/27695339/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010007266.1:subseq_110615,100586_ Strand: +
 Positions:
 -Exon 1  48242        48296
 -Exon 2  50010        50158
 -Exon 3  50467        50581
 -Exon 4  51878        51906

 Redox box: no

Query   MSFCSFFGGEVFQNHFEPG <---Intron---> VYVCAKCGHELFSSRSKYAHSSPWPAFTETIHADSVAKRPERNSPEALK <---Intron---> 
        ||||||||||||||||||| <   1713bp   > ||||||||||||||||||||||||||||||/|||||||||||||||||| <   308bp    > 
Target  MSFCSFFGGEVFQNHFEPG                VYVCAKCGHELFSSRSKYAHSSPWPAFTETVHADSVAKRPERNSPEALK                
        atttattggggtcactgcg                gtgtgatgcgcttactatgcttctcgtagagcggaggaccgcatcggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcagaccacta                
        gctccccgcgtcgcctgg                tctgccgtccgcccccaacacacggcctggcttattgcgtagctgtacag                
                                                                                                            

Query   VSCGKCGNGLGHEFLNDGPKPGKSRFUIFSSSLKFIPKG <---Intron---> KGTSGSQEA
        ||||||||||||||||||||||/|||||||||||||||| <   1296bp   > |||||||||
Target  VSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFIPKG                KGTSGSQEA
        gttgatgagcgcgtcaggcacgctcttataatcatacag                agatgtcgg
        tcggaggagtgaattaagcacgacgtgttggctattca                gagccgcaac
        gcccgtgtggccgcgttccggggcccaacccaggccga                caattctggg
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 435 ; UGA-SECIS: 498

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010007266.1:subseq_110615,100586_ Strand = + Positions = 52342 - 52412
 Found by:  Infernal (score=32.21) Covels (score=23.77)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -22.24

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....{[[{(((((((((((.....-.........)))))))))))}]]}..--..-.)))))....
 target  UGCAGUCAC---UACAUGAUUCACUCUGGUUAAACC-CUUCCAGGCAGCCAGAGUGGUGACGA--UC-UGUGACCUGC
                         ****           ^^^                       ****