_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-14
 Query name: gi|1012197853|ref|XP_016011848.1| PREDICTED: selenoprotein K [Rousettus aegyptiacus]
 Query range: 3-94  (total 94)

 Target: /data/www-rg/seblastian_results/907863706/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010006495.1:subseq_1,21408_ Strand: +
 Positions:
 -Exon 1  13321        13424
 -Exon 2  14915        14998
 -Exon 3  15568        15655

 Redox box: no

Query   YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGNSSDSRYDDGRG <---Intron---> PPGNP
        //| ||||||||||||||||||||||||||||||| <   1490bp   > |||||||||||||||||||||||||||| <   569bp    > |||||
Target  FLSVGQVLDSRSQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKRRGYGNSSDSRYDDGRG                PPGNP
        tttggcgtgacactctatttaagtttgaggtggtt                taaccccggaaaagtgattgtatgggag                ccgac
        ttctgattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg                ccgac
        cgtaaaggccgtgcagaatgaacccgaaagcgtg                ttatgtgatgagaactaccttcatttaa                gaaact
                                                                                                            

Query   PRRMGRINHLRGPNPPPMAGGUGR
        |||||||||||||/||||||||||
Target  PRRMGRINHLRGPSPPPMAGGUGR
        caaagcaacccgcacccagggtga
        cggtggtaatggcgccctcggggg
        caagtatttatcttttagttaaag
                             *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 390 ; UGA-SECIS: 396

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010006495.1:subseq_1,21408_ Strand = + Positions = 16046 - 16133
 Found by:  Infernal (score=22.35) Covels (score=37.35)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.23

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((.................))))))))))))]]}......-...))))})...
 target  UGCUCUGUGCCUUCACAGACGGAUGAGGUCGUGCUGGGAAUUCCCUCCCCAGGGAUCUGGCAUGACUGACAUGCAG-UUCUAUAAAUGC
                                ****           ^^                          ****