_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-87
 Query name: gi|169403968|ref|NP_001108590.1| selenoprotein P precursor [Canis lupus familiaris]
 Query range: 1-393  (total 393)

 Target: /data/www-rg/seblastian_results/431023752/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010004288.1:subseq_82498,107009_ Strand: +
 Positions:
 -Exon 1  50000        50202
 -Exon 2  50936        51148
 -Exon 3  52444        52561
 -Exon 4  56482        57114

 Redox box: YES

Query   MWRSLGLALALCLLPWGGAESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEKEGFLNI
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   733bp    > ||||||||||||||||
Target  MWRSLGLALALCLLPWGGAESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGFLNI
        ataacgcgcgctccctggggacgcatttacccgtaaagcacacatagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagctgaacccggtgaaacttacggctcttcttacggatgttaccg                taatgtataaagttat
        ggacggtcgtcttcagaaagcgaaccttgatacgcagtataggcattagagttttaccacgcaggac                agacggagggaaatgcc
                                                                  *                                         

Query   SYVVVNHQGLSSQLKYMYLKNKVSEHIPVYQQEENQTDVWTLLNGKKDDFLIYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKRAYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1295bp   > |||||||||||||||||||||||||||||
Target  SYVVVNHQGLSSQLKYMYLKNKVSEHIPVYQQEENQTDVWTLLNGKKDDFLIYDR                CGRLVYHLGLPYSFLTFPYVEEAIKRAYC
        ttgggaccgcttctatatcaaagtgcacgtccggacaggtactagaaggtcatga                tgccgtccgtctttcatctggggaaagtt
        catttaaagtccataatataaatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtcacttctcataactagcag
        tttttttaacttaaatgttatgtagcttttaaaataatcgtcatgagtcccatc                atcttattttgtcccattataaactggtct
                                                                                                            

Query   EEKCGNCSLT <---Intron---> VLEDEEVCKMVSSGTVESTTEAPQPHPHDHHLHHHHHHHHKHWHRLMPHGNDELSENQQPEEPDVSEHPAPQGL
        |||||||||| <   3920bp   > |||||| ||/||||||||||||||||||||||  ||||||||||/  || ||||||||||||||||||||||||
Target  EEKCGNCSLT                VLEDEEFCKIVSSGTVESTTEAPQPHPHDHHL--HHHHHHKHWHQ--PHENDELSENQQPEEPDVSEHPAPQGL
        ggatgattca                gcggggttaagttgaggaaaggccccccgccc--ccccccactcc--ccgaggctgacccggcggtgccgccgc
        aaaggagctc                ttaaaatgattccgctagccaccacacaaaat--aaaaaaaagaa--caaaaatcaaaacaacatcaacccagt
        agatacctcg                cgatagctaaatgccgacatgtcgatctccct--cttttcgtgtg--ttgttgcagtgaaaaattcgttatact
                                                                                                            

Query   HRHHKHKDHQRQGHPDNUDMPAGSESLQLSVPQNQLURKGCRNQLLCKLPRDSGLAPSSUCUHURHLIFEKTGSAITUQCKETLPSLCSUQGLWAEENVI
        | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HHHHKHKDHQRQGHPDNUDMPAESESLQLSVPQNQLURKGCRNQLLCKLPRDSGLAPSSUCUHURHLIFEKTGSAITUQCKETLPSLCSUQGLWAEENVI
        ccccacagccacgccgatgacggagatcctgccacctcagtaactctatcagtgtgcaatttctcccatgaagtgaatctagacctttatcgctgggaga
        aaaaaaaaaagagacaagatccagagtatctcaaatggagggaattgatcgacgtccgggggaggatttaacgcctcgagaactcctgggagtgcaaatt
        tcctgcgccgagccaccatgaaatataatttaatgcaagatacgaccagtataggctccacacaatgatagagtaccaataaccctaccagatgaggcct
                         *                  *                      * * *             *           *          

Query   ESUQURWPPAAUQASQQLRPTEASTNUSUKYKTKMUKULTY
        |||||||||||||||||||||||||||||||| |||||| |
Target  ESUQURWPPAAUQASQQLRPTEASTNUSUKYKNKMUKULPY
        gttctctccggtcgacccacaggaaatatataaaatatcct
        acgagggccccgacgaatgccacgcagggaaaaatgagtca
        gtagatgtataaaatggcgcaaccccacaatgcagaaatac
          * *      *              * *      * *   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 251 ; UGA-SECIS: 260

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010004288.1:subseq_82498,107009_ Strand = + Positions = 57366 - 57437
 Found by:  Infernal (score=29.55) Covels (score=33.38)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -10.34

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((.--....{[[[((((((((([(.....-.........)])))))))))]]]}..--..-.))))})...
 target  UCUACUUGCA--UUAAUGAAAACAGAGACAUAAACU-AUGACCUAGGGGUUUCUGUUGGAUAG--UU-AGCAAUUUAG
                         ****           ^^^                       ****                 
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-87
 Query name: gi|169403968|ref|NP_001108590.1| selenoprotein P precursor [Canis lupus familiaris]
 Query range: 1-393  (total 393)

 Target: /data/www-rg/seblastian_results/431023752/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010004288.1:subseq_82498,107009_ Strand: +
 Positions:
 -Exon 1  50000        50202
 -Exon 2  50936        51148
 -Exon 3  52444        52561
 -Exon 4  56482        57114

 Redox box: YES

Query   MWRSLGLALALCLLPWGGAESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEKEGFLNI
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   733bp    > ||||||||||||||||
Target  MWRSLGLALALCLLPWGGAESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGFLNI
        ataacgcgcgctccctggggacgcatttacccgtaaagcacacatagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagctgaacccggtgaaacttacggctcttcttacggatgttaccg                taatgtataaagttat
        ggacggtcgtcttcagaaagcgaaccttgatacgcagtataggcattagagttttaccacgcaggac                agacggagggaaatgcc
                                                                  *                                         

Query   SYVVVNHQGLSSQLKYMYLKNKVSEHIPVYQQEENQTDVWTLLNGKKDDFLIYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKRAYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1295bp   > |||||||||||||||||||||||||||||
Target  SYVVVNHQGLSSQLKYMYLKNKVSEHIPVYQQEENQTDVWTLLNGKKDDFLIYDR                CGRLVYHLGLPYSFLTFPYVEEAIKRAYC
        ttgggaccgcttctatatcaaagtgcacgtccggacaggtactagaaggtcatga                tgccgtccgtctttcatctggggaaagtt
        catttaaagtccataatataaatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtcacttctcataactagcag
        tttttttaacttaaatgttatgtagcttttaaaataatcgtcatgagtcccatc                atcttattttgtcccattataaactggtct
                                                                                                            

Query   EEKCGNCSLT <---Intron---> VLEDEEVCKMVSSGTVESTTEAPQPHPHDHHLHHHHHHHHKHWHRLMPHGNDELSENQQPEEPDVSEHPAPQGL
        |||||||||| <   3920bp   > |||||| ||/||||||||||||||||||||||  ||||||||||/  || ||||||||||||||||||||||||
Target  EEKCGNCSLT                VLEDEEFCKIVSSGTVESTTEAPQPHPHDHHL--HHHHHHKHWHQ--PHENDELSENQQPEEPDVSEHPAPQGL
        ggatgattca                gcggggttaagttgaggaaaggccccccgccc--ccccccactcc--ccgaggctgacccggcggtgccgccgc
        aaaggagctc                ttaaaatgattccgctagccaccacacaaaat--aaaaaaaagaa--caaaaatcaaaacaacatcaacccagt
        agatacctcg                cgatagctaaatgccgacatgtcgatctccct--cttttcgtgtg--ttgttgcagtgaaaaattcgttatact
                                                                                                            

Query   HRHHKHKDHQRQGHPDNUDMPAGSESLQLSVPQNQLURKGCRNQLLCKLPRDSGLAPSSUCUHURHLIFEKTGSAITUQCKETLPSLCSUQGLWAEENVI
        | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HHHHKHKDHQRQGHPDNUDMPAESESLQLSVPQNQLURKGCRNQLLCKLPRDSGLAPSSUCUHURHLIFEKTGSAITUQCKETLPSLCSUQGLWAEENVI
        ccccacagccacgccgatgacggagatcctgccacctcagtaactctatcagtgtgcaatttctcccatgaagtgaatctagacctttatcgctgggaga
        aaaaaaaaaagagacaagatccagagtatctcaaatggagggaattgatcgacgtccgggggaggatttaacgcctcgagaactcctgggagtgcaaatt
        tcctgcgccgagccaccatgaaatataatttaatgcaagatacgaccagtataggctccacacaatgatagagtaccaataaccctaccagatgaggcct
                         *                  *                      * * *             *           *          

Query   ESUQURWPPAAUQASQQLRPTEASTNUSUKYKTKMUKULTY
        |||||||||||||||||||||||||||||||| |||||| |
Target  ESUQURWPPAAUQASQQLRPTEASTNUSUKYKNKMUKULPY
        gttctctccggtcgacccacaggaaatatataaaatatcct
        acgagggccccgacgaatgccacgcagggaaaaatgagtca
        gtagatgtataaaatggcgcaaccccacaatgcagaaatac
          * *      *              * *      * *   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 676 ; UGA-SECIS: 685

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = JAEUCK010004288.1:subseq_82498,107009_ Strand = + Positions = 57791 - 57854
 Found by:  Infernal (score=25.5) Covels (score=16.12)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -7.3

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({{((((---....([[{(((({(.((((......--.-----...)))))}))))}]])----..-.))))}})).
 target  UUUCCAUAG---UCAAUGAUGGUUCAAUAGGUAAACU--A-----AGUCCUAUAAACCUGAA----CU-CCUAUAUGGU
                         ****            ^^^                       ****