_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-43
 Query name: gi|256818814|ref|NP_001157978.1| selenoprotein H [Canis lupus familiaris]
 Query range: 1-122  (total 122)

 Target: /data/www-rg/seblastian_results/136599756/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010003649.1:subseq_190560,100563_ Strand: +
 Positions:
 -Exon 1  50000        50121
 -Exon 2  50218        50363
 -Exon 3  50466        50563

 Redox box: YES

Query   MASRGRKRKAEAAGVAAAEKREKPASGRKAVEEATVVIEHC <---Intron---> TSURVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLL
        |||||||||||||||||||||||||||||||||||/||||| <    96bp    > |||||||||||||||||||||||||||||||||||||||||||
Target  MASRGRKRKAEAAGVAAAEKREKPASGRKAVEEATLVIEHC                TSURVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLL
        agtcgaacaggggggggggacgacgagaagggggacgagct                aatcgtgcagggcacgcccgacgccgggacgaccagatggacc
        tccgggagacaccgtcccaagaaccgggactaacctttaag                cgggtaggaccctgactgtaccatctataccacggggtatctt
        gttcgggggcggggcggggagggggccggcggggccgcgt                cgcacccgcccgcgcgggcggcggcggggtgcgcggcccggggg
                                                                   *                                        

Query   RPDGSS <---Intron---> VELWTGIKKGPPRKLKFPEPQEVVKALKQHLS
        |||||| <   102bp    > ||||||||||||||||||||||||||||||||
Target  RPDGSS                VELWTGIKKGPPRKLKFPEPQEVVKALKQHLS
        ccggaa                ggctagaaagcccacatcgccgggagcaccct
        gcagg                gtatgcgtaagccgatatcacaattactaaatc
        cgccc                tggtgtgtgggcacacgctgtaggggggggctg
                                                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 712 ; UGA-SECIS: 946

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010003649.1:subseq_190560,100563_ Strand = + Positions = 51276 - 51343
 Found by:  Infernal (score=27.6) Covels (score=23.64)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -11.62

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{(({(((((((......--------...)))))))}))}]])......-...)}))))...
 target  GUUGGAGCA---UUUAUGACGGAACAUGGCCAAACU--------UCAGUCAUGUACCUGAAGCCAUG-GUUUCUUCCCUC
                         ****           ^^^                       ****